Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

25764631 .. 25767574

Gene Structure 2944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGAAGCATATTGGCATGATTGCAGGTGGTTCTGGTATTACTCCAGTGCTTCAGGTCATTGACGCTACACTGAAAAATCTTGATGACACAACCAAGGTTACTGGGATATATCGGGCTTTGAGCACTTACATTGATTGTCTGCATATAAAAAAGTCTAACAAGTTTAGAATGCTGGCAGAGGCGCAGAGGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTGATGAAAAGAGGGTCAACAATGCAGGAGTTGGCGGATTCACAGTGATTGGAGAGAACGTAAAGAACTTAACTTTCGATTATGAACATAGAGAGACATTGAATATCCCAGAGAATTTAAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

120

Amino Acids

13.31

Weight (kDa)

5.9

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	7 - 38	6e-06	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AciI	CCGC	1 cut(s)	270
AcsI	RAATTY	3 cut(s)	202, 217, 349
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	202, 217, 349
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	96, 207
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse1I	ACTGG	2 cut(s)	47, 109
BseDI	CCNNGG	2 cut(s)	96, 207
BseNI	ACTGG	2 cut(s)	47, 109
BsiHKAI	GWGCWC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	47, 109
BssECI	CCNNGG	2 cut(s)	96, 207
BssT1I	CCWWGG	2 cut(s)	96, 207
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	323
BtsIMutI	CAGTG	3 cut(s)	54, 71, 285
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	187
CseI	GACGC	1 cut(s)	74
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
DraI	TTTAAA	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	96, 207
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	96, 207
ErhI	CCWWGG	2 cut(s)	96, 207
FaeI	CATG	1 cut(s)	22
FaiI	YATR	9 cut(s)	12, 20, 112, 147, 149, 318, 324, 359, 361
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	229, 273
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	26, 145, 260
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	12, 21, 41, 60, 90, 161, 246, 357
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	16, 236
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	202, 217, 349
MnlI	CCTC	3 cut(s)	175, 183, 240
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	305, 353
Mva1269I	GAATGC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	17
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	229, 273
SaqAI	TTAA	2 cut(s)	305, 353
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	4 cut(s)	31, 60, 102, 297
SmiI	ATTTAAAT	1 cut(s)	354
Sse9I	AATT	3 cut(s)	202, 217, 349
SsiI	CCGC	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	96, 207
SwaI	ATTTAAAT	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	312
TasI	AATT	3 cut(s)	202, 217, 349
TfiI	GAWTC	2 cut(s)	229, 273
Tru1I	TTAA	2 cut(s)	305, 353
Tru9I	TTAA	2 cut(s)	305, 353
TscAI	CASTG	3 cut(s)	54, 78, 285
TspDTI	ATGAA	3 cut(s)	17, 255, 333
TspRI	CASTG	3 cut(s)	54, 78, 285
XapI	RAATTY	3 cut(s)	202, 217, 349
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.