Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001163.1

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

197214 .. 200350

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001163.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgccaccgcctgcgtcgtcgcccggttcgccaccgtcaccgtcgtcgatgttgtgtgcaccaggtttcattgagggtcttcttcaagtgaaagagactttgcagaaagatttgtggagagaaccaaataagggtgaactagctgaggcaacaattgaagtgaagagacccattgaaaagctgagatatgttcccaacatgaagaagcatattagcatgattgcaggtggttcttgtattacttcaattcttcaggtcattgacgctatacttcaaaatcttgttgacacaaccaagggccagcgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

102

Amino Acids

11.09

Weight (kDa)

8.66

Isoelectric Point (pI)

88.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AciI	CCGC	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	5 cut(s)	86, 158, 176, 246, 275
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	143, 181
AluI	AGCT	2 cut(s)	143, 181
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	2 cut(s)	89, 160
Alw44I	GTGCAC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	30, 146
BaeGI	GKGCMC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	89, 160
BfaI	CTAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	24, 63
BmgT120I	GGNCC	1 cut(s)	298
BmrFI	CCNGG	2 cut(s)	24, 63
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	135, 173
BseSI	GKGCMC	1 cut(s)	61
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	89, 160
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	136, 174
BspMI	ACCTGC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	36, 42
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	12, 302
BstDEI	CTNAG	2 cut(s)	144, 182
BstMAI	GTCTC	2 cut(s)	89, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	22, 61
BstSLI	GKGCMC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	12, 302
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	2 cut(s)	3, 272
CsiI	ACCWGGT	1 cut(s)	61
CviAII	CATG	2 cut(s)	199, 217
CviJI	RGCY	3 cut(s)	143, 181, 300
CviKI_1	RGCY	3 cut(s)	143, 181, 300
DdeI	CTNAG	2 cut(s)	144, 182
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	202, 220
FaiI	YATR	5 cut(s)	189, 200, 210, 218, 269
FatI	CATG	2 cut(s)	198, 216
FspBI	CTAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	2 cut(s)	3, 272
Hin1II	CATG	2 cut(s)	202, 220
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	30, 146
Hpy166II	GTNNAC	3 cut(s)	59, 137, 286
Hpy8I	GTNNAC	3 cut(s)	59, 137, 286
Hpy99I	CGWCG	4 cut(s)	19, 22, 46, 49
HpyCH4III	ACNGT	2 cut(s)	36, 42
HpyCH4V	TGCA	3 cut(s)	59, 103, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	144, 182
Hsp92II	CATG	2 cut(s)	202, 220
LpnPI	CCDG	6 cut(s)	24, 37, 48, 75, 210, 239
MabI	ACCWGGT	1 cut(s)	61
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	36
MboII	GAAGA	5 cut(s)	71, 74, 175, 214, 242
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	153, 246
MnlI	CCTC	2 cut(s)	67, 139
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	24, 63
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	202, 220
NmuCI	GTSAC	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	24, 63
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	5 cut(s)	67, 145, 183, 229, 258
SexAI	ACCWGGT	1 cut(s)	61
Sse9I	AATT	2 cut(s)	153, 246
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	22, 61
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	36, 42
TaqI	TCGA	1 cut(s)	47
TasI	AATT	2 cut(s)	153, 246
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	58, 215
VneI	GTGCAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.