Rorug01G0101200

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001198
Physical Location & Seq
Forward (+)
16872787 .. 16874487
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0101200.1

Sequence Viewer

Length: 1701 bp
ATGTCGATTCAACGTAAGAGGGTGAAAAATGGAGGTGACATCAGCAGTGATCTGGAGGCTCTCAGAGTCGAGGATCCGGACTCCTCGGTGCAGACTCCTCCGGCTGCCTTACCTCAGATGACTTACGCTAGCACACTCAAGAATCCAGTGGATCGCTACAGGCAAACCATGACGAAGGACTTTGAGTTTACTGATGATGACTGCTCTTACTCTTTGGGTAAGCATGGATTGAATGTTTCCTTCTCTGAAAAGGTTCATAATAAGCTTGATTTTGACTGGCGCTGCGCTGTGATTGTGAAACTCATGGGAAAACCCAATTCCACCAACACTTTTGATTTTATGCTAAGAGGTTTAAGAAGAAAATGGCAAGTCAAGTGTGGCTGGCAACTCATTGATCTTCCTAATGATTTTTTCATTGTCAAATTCAACTTAGAAGAGGATATGAACTATGCTTTATGTGGTGGACCTTGGATTTTGGCTGGACAGACGTTGCTTGTGAGAAAATGGAGACCTGATTTTGATCCTATGAATGAATTTATTGGAAAAATGGCATTATGGGTCAGAATTTTTAGGCTGCCTGTTAAGTACTTTAAGGAGTTTACTGTAGCCAAAATTGGAAAAATTCTTGGGGATGTTGTGAAGGTTGACAAACTTTCTGTTGGACAATCCAGGGGAAAATTTGCTCGTGTCTGTATCGAAATTGATTTAAGCAAGCCCCTTCGTCCATATGTTGAAGTTGAATCTACTGCTTATAATGTTGTGTATGAAGGCATTTCCCTTATTTGCTTTGAGTGTGGCTGCTATGGCCATTCCAAGGATAAATGTCCCACTCTGAAAGCTCCCACAAAGGATGACATTGTCCAACATGGCTCTAACAATGACCCTGCTGTGGCCCATACTTGTGATACTGCTACTGCTGTCCCTTCTGATGTGAGCATGACAACTGTGATGAATGGACCTGGCTCTCCTCCTACATGTGATGTGATTAAGGATGATATGGGCCCTTGGATGCTTATGAGCTACAGAAACAAGAAGAAAAGTAGTGACACTGTTGTTGCTAAAAAGCATGGGAACTCTGGTTCCAGGTTTTCTGTCTTGCAAGCTGAGAGTGGCATGGAGTCTGACCTGCCGGAAAAGACCATACAAGACAACCCCTATGAGACCGTACCTCATGTTGTCAAACTTTGGAAGAATTTTCAAGAGAAAAGGAAAGTTGTCTCTGTGTCTACAAATTCCAATTCTGCCAATGACACTAATGCCACTCTGAAGAATTCTGATCTACATGGTAATCACTCCCCTGCTAAAACTGCTTCTGTATTTTCTGACAACTCTAAAATAAAGAGTAAAAGTCTGTCTAGAATCCCAATGAAAGATGTTTCTAACATTGGAAGCTGCAGTGGATCTAAAGTTGACATTCATTACCAAAGAAAAACCAAAGGAGTTAACCCTATCACCAAACATCAGACTAATGTTTTCAAAAAGCTCTCGTTTGAAAATATGGGGTCTAATGCTTTTGGTGATGGAATTTCTGCCATATTTGGTCATTGCCCACCTGAGGAGTCCACATCAATTGGGGATTTGGTATCCTCCATAAATCATGACTCTGAAAACTTTGTGGAGAAAACCTTTGCTGCTAATAGCATGCTGACAGTTAATAATGACCTGCCTTCCCATGATGGGGAGAGCATGGTTGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

566

Amino Acids

62.93

Weight (kDa)

8.26

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 92 - 176 9.6e-13 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
Acc36I ACCTGC 2 cut(s) 1134, 1671
AccI GTMKAC 1 cut(s) 1226
AccIII TCCGGA 1 cut(s) 76
AclWI GGATC 5 cut(s) 68, 81, 159, 515, 1408
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 9 cut(s) 422, 533, 564, 621, 677, 1192, 1231, 1270, 1524
AcuI CTGAAG 1 cut(s) 1286
AfaI GTAC 2 cut(s) 587, 1167
AfiI CCNNNNNNNGG 5 cut(s) 814, 889, 1555, 1677, 1678
AflIII ACRYGT 1 cut(s) 974
AgsI TTSAA 8 cut(s) 11, 232, 427, 734, 740, 1199, 1477, 1493
AjnI CCWGG 3 cut(s) 668, 958, 1082
AloI GAACNNNNNNTCC 4 cut(s) 1063, 1064, 1095, 1096
AluBI AGCT 6 cut(s) 265, 839, 1020, 1103, 1392, 1483
AluI AGCT 6 cut(s) 265, 839, 1020, 1103, 1392, 1483
Alw26I GTCTC 3 cut(s) 502, 1154, 1222
AlwI GGATC 5 cut(s) 68, 81, 159, 515, 1408
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 3 cut(s) 805, 891, 1000
ApaI GGGCCC 1 cut(s) 1004
ApeKI GCWGC 6 cut(s) 104, 282, 574, 798, 1392, 1631
ApoI RAATTY 9 cut(s) 422, 533, 564, 621, 677, 1192, 1231, 1270, 1524
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 2 cut(s) 282, 287
AspS9I GGNCC 5 cut(s) 464, 892, 956, 1000, 1001
AsuHPI GGTGA 4 cut(s) 34, 47, 1444, 1529
AsuNHI GCTAGC 1 cut(s) 128
AvaII GGWCC 2 cut(s) 464, 956
AxyI CCTNAGG 1 cut(s) 1554
BaeGI GKGCMC 1 cut(s) 1004
BalI TGGCCA 1 cut(s) 807
BamHI GGATCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 1004
BauI CACGAG 1 cut(s) 684
BbvI GCAGC 6 cut(s) 91, 269, 561, 785, 1379, 1618
BccI CCATC 2 cut(s) 1514, 1670
BciT130I CCWGG 3 cut(s) 670, 960, 1084
BciVI GTATCC 1 cut(s) 1594
BcoDI GTCTC 3 cut(s) 502, 1154, 1222
BfaI CTAG 2 cut(s) 129, 1356
BfmI CTRYAG 4 cut(s) 157, 603, 1021, 1393
BfoI RGCGCY 1 cut(s) 283
BfuAI ACCTGC 2 cut(s) 1134, 1671
BfuI GTATCC 1 cut(s) 1594
BisI GCNGC 6 cut(s) 105, 283, 575, 799, 1393, 1632
BlsI GCNGC 6 cut(s) 106, 284, 576, 800, 1394, 1633
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 3 cut(s) 670, 960, 1084
Bme18I GGWCC 2 cut(s) 464, 956
BmgT120I GGNCC 5 cut(s) 464, 892, 956, 1000, 1001
BmiI GGNNCC 3 cut(s) 75, 1002, 1081
BmrFI CCNGG 3 cut(s) 670, 960, 1084
BmsI GCATC 1 cut(s) 999
BmtI GCTAGC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 519
BsaI GGTCTC 2 cut(s) 502, 1154
BsaJI CCNNGG 5 cut(s) 84, 467, 669, 813, 1004
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 5 cut(s) 814, 889, 1555, 1677, 1678
Bse1I ACTGG 2 cut(s) 146, 281
Bse21I CCTNAGG 1 cut(s) 1554
Bse3DI GCAATG 1 cut(s) 1543
Bse8I GATNNNNATC 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 3 cut(s) 670, 960, 1084
BseDI CCNNGG 5 cut(s) 84, 467, 669, 813, 1004
BseGI GGATG 4 cut(s) 637, 856, 997, 1014
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 5 cut(s) 814, 889, 1555, 1677, 1678
BseMI GCAATG 1 cut(s) 1543
BseMII CTCAG 4 cut(s) 76, 128, 1095, 1545
BseNI ACTGG 2 cut(s) 146, 281
BseRI GAGGAG 4 cut(s) 73, 87, 957, 1571
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 6 cut(s) 91, 269, 561, 785, 1379, 1618
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 3 cut(s) 807, 893, 1002
BsiSI CCGG 3 cut(s) 77, 101, 1130
BslFI GGGAC 2 cut(s) 810, 905
BslI CCNNNNNNNGG 5 cut(s) 814, 889, 1555, 1677, 1678
BsmAI GTCTC 3 cut(s) 502, 1154, 1222
BsmFI GGGAC 2 cut(s) 810, 905
BsnI GGCC 3 cut(s) 807, 893, 1002
Bso31I GGTCTC 2 cut(s) 502, 1154
Bsp120I GGGCCC 1 cut(s) 1000
Bsp1286I GDGCHC 1 cut(s) 1004
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
BspANI GGCC 3 cut(s) 807, 893, 1002
BspCNI CTCAG 4 cut(s) 75, 127, 1096, 1546
BspEI TCCGGA 1 cut(s) 76
BspHI TCATGA 1 cut(s) 1597
BspLI GGNNCC 3 cut(s) 75, 1002, 1081
BspMAI CTGCAG 1 cut(s) 1397
BspMI ACCTGC 2 cut(s) 1134, 1671
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 5 cut(s) 68, 81, 159, 515, 1408
BspTNI GGTCTC 2 cut(s) 502, 1154
BsrDI GCAATG 1 cut(s) 1543
BsrI ACTGG 2 cut(s) 146, 281
BssECI CCNNGG 5 cut(s) 84, 467, 669, 813, 1004
BssMI GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 3 cut(s) 467, 813, 1004
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 3 cut(s) 670, 960, 1084
Bst4CI ACNGT 5 cut(s) 604, 946, 1051, 1165, 1651
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 5 cut(s) 130, 383, 713, 1101, 1643
BstDEI CTNAG 6 cut(s) 62, 114, 344, 430, 1104, 1554
BstF5I GGATG 4 cut(s) 637, 856, 997, 1014
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 2 cut(s) 282, 287
BstKTI GATC 7 cut(s) 52, 76, 154, 397, 523, 1279, 1403
BstMAI GTCTC 3 cut(s) 502, 1154, 1222
BstMBI GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
BstMWI GCNNNNNNNGC 2 cut(s) 804, 1307
BstNI CCWGG 3 cut(s) 670, 960, 1084
BstNSI RCATGY 2 cut(s) 978, 1645
BstSCI CCNGG 3 cut(s) 668, 958, 1082
BstSFI CTRYAG 4 cut(s) 157, 603, 1021, 1393
BstSLI GKGCMC 1 cut(s) 1004
BstV1I GCAGC 6 cut(s) 91, 269, 561, 785, 1379, 1618
BstX2I RGATCY 2 cut(s) 73, 1400
BstYI RGATCY 2 cut(s) 73, 1400
Bsu36I CCTNAGG 1 cut(s) 1554
BsuI GTATCC 1 cut(s) 1594
BsuRI GGCC 3 cut(s) 807, 893, 1002
BtsCI GGATG 4 cut(s) 637, 856, 997, 1014
BtsI GCAGTG 2 cut(s) 52, 1402
BtsIMutI CAGTG 4 cut(s) 52, 153, 1047, 1402
BveI ACCTGC 2 cut(s) 1134, 1671
Cac8I GCNNGC 5 cut(s) 130, 383, 713, 1101, 1643
CciI TCATGA 1 cut(s) 1597
CfoI GCGC 2 cut(s) 282, 287
Cfr13I GGNCC 5 cut(s) 464, 892, 956, 1000, 1001
Csp6I GTAC 2 cut(s) 586, 1166
CspCI CAANNNNNGTGG 2 cut(s) 1552, 1587
CviQI GTAC 2 cut(s) 586, 1166
DdeI CTNAG 6 cut(s) 62, 114, 344, 430, 1104, 1554
DpnI GATC 7 cut(s) 51, 75, 153, 396, 522, 1278, 1402
DpnII GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 3 cut(s) 467, 813, 1004
Eco24I GRGCYC 1 cut(s) 1004
Eco31I GGTCTC 2 cut(s) 502, 1154
Eco47I GGWCC 2 cut(s) 464, 956
Eco57I CTGAAG 1 cut(s) 1286
Eco81I CCTNAGG 1 cut(s) 1554
EcoO109I RGGNCCY 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 1270
EcoRII CCWGG 3 cut(s) 668, 958, 1082
EcoT14I CCWWGG 3 cut(s) 467, 813, 1004
EcoT38I GRGCYC 1 cut(s) 1004
ErhI CCWWGG 3 cut(s) 467, 813, 1004
FaqI GGGAC 2 cut(s) 810, 905
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 1226
Fnu4HI GCNGC 6 cut(s) 105, 283, 575, 799, 1393, 1632
FokI GGATG 4 cut(s) 644, 863, 1004, 1021
FriOI GRGCYC 1 cut(s) 1004
Fsp4HI GCNGC 6 cut(s) 105, 283, 575, 799, 1393, 1632
FspBI CTAG 2 cut(s) 129, 1356
GlaI GCGC 2 cut(s) 281, 286
GluI GCNGC 6 cut(s) 105, 283, 575, 799, 1393, 1632
GsuI CTGGAG 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 3 cut(s) 807, 893, 1002
HapII CCGG 3 cut(s) 77, 101, 1130
HhaI GCGC 2 cut(s) 282, 287
Hin6I GCGC 2 cut(s) 280, 285
HinP1I GCGC 2 cut(s) 280, 285
HincII GTYRAC 3 cut(s) 646, 1411, 1444
HindII GTYRAC 3 cut(s) 646, 1411, 1444
HindIII AAGCTT 1 cut(s) 263
HpaI GTTAAC 1 cut(s) 1444
HpaII CCGG 3 cut(s) 77, 101, 1130
HphI GGTGA 4 cut(s) 34, 47, 1444, 1529
Hpy166II GTNNAC 8 cut(s) 189, 464, 600, 646, 1227, 1411, 1444, 1563
Hpy188III TCNNGA 6 cut(s) 53, 77, 139, 1199, 1356, 1598
Hpy8I GTNNAC 8 cut(s) 189, 464, 600, 646, 1227, 1411, 1444, 1563
HpyAV CCTTC 7 cut(s) 169, 250, 634, 728, 761, 933, 1677
HpyCH4III ACNGT 5 cut(s) 604, 946, 1051, 1165, 1651
HpyCH4IV ACGT 2 cut(s) 13, 488
HpyCH4V TGCA 3 cut(s) 91, 1099, 1395
HpyF10VI GCNNNNNNNGC 2 cut(s) 804, 1307
HpyF3I CTNAG 6 cut(s) 62, 114, 344, 430, 1104, 1554
HpySE526I ACGT 2 cut(s) 13, 488
HspAI GCGC 2 cut(s) 280, 285
Kpn2I TCCGGA 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 1444
Kzo9I GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
LmnI GCTCC 1 cut(s) 844
Lsp1109I GCAGC 6 cut(s) 91, 269, 561, 785, 1379, 1618
LweI GCATC 1 cut(s) 999
MaeI CTAG 2 cut(s) 129, 1356
MaeII ACGT 2 cut(s) 13, 488
MaeIII GTNAC 2 cut(s) 35, 1043
MalI GATC 7 cut(s) 51, 75, 153, 396, 522, 1278, 1402
MboI GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
MboII GAAGA 6 cut(s) 369, 389, 446, 1045, 1201, 1279
MfeI CAATTG 1 cut(s) 1569
MflI RGATCY 2 cut(s) 73, 1400
MhlI GDGCHC 1 cut(s) 1004
MlsI TGGCCA 1 cut(s) 807
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 6 cut(s) 74, 75, 88, 1127, 1568, 1595
MmeI TCCRAC 2 cut(s) 640, 886
Mox20I TGGCCA 1 cut(s) 807
MroI TCCGGA 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 807
MseI TTAA 8 cut(s) 353, 582, 591, 707, 987, 1443, 1653, 1699
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 807
MspI CCGG 3 cut(s) 77, 101, 1130
MspR9I CCNGG 3 cut(s) 670, 960, 1084
MteI GCGCNGCGC 1 cut(s) 283
MunI CAATTG 1 cut(s) 1569
MvaI CCWGG 3 cut(s) 670, 960, 1084
MwoI GCNNNNNNNGC 2 cut(s) 804, 1307
NdeI CATATG 1 cut(s) 727
NdeII GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
NheI GCTAGC 1 cut(s) 128
NlaIV GGNNCC 3 cut(s) 75, 1002, 1081
NmuCI GTSAC 2 cut(s) 35, 1043
NspI RCATGY 2 cut(s) 978, 1645
PaeI GCATGC 1 cut(s) 1645
PagI TCATGA 1 cut(s) 1597
PciI ACATGT 1 cut(s) 974
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 7, 142, 740, 1359
PflFI GACNNNGTC 1 cut(s) 857
PkrI GCNGC 6 cut(s) 106, 284, 576, 800, 1394, 1633
PleI GAGTC 6 cut(s) 74, 74, 88, 1126, 1567, 1595
PpsI GAGTC 6 cut(s) 74, 74, 88, 1126, 1567, 1595
PscI ACATGT 1 cut(s) 974
PsiI TTATAA 1 cut(s) 753
Psp6I CCWGG 3 cut(s) 668, 958, 1082
PspGI CCWGG 3 cut(s) 668, 958, 1082
PspN4I GGNNCC 3 cut(s) 75, 1002, 1081
PspOMI GGGCCC 1 cut(s) 1000
PspPI GGNCC 5 cut(s) 464, 892, 956, 1000, 1001
PstI CTGCAG 1 cut(s) 1397
PsuI RGATCY 2 cut(s) 73, 1400
PsyI GACNNNGTC 1 cut(s) 857
RsaI GTAC 2 cut(s) 587, 1167
RsaNI GTAC 2 cut(s) 586, 1166
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 8 cut(s) 353, 582, 591, 707, 987, 1443, 1653, 1699
SatI GCNGC 6 cut(s) 105, 283, 575, 799, 1393, 1632
Sau3AI GATC 7 cut(s) 49, 73, 151, 394, 520, 1276, 1400
Sau96I GGNCC 5 cut(s) 464, 892, 956, 1000, 1001
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 6 cut(s) 74, 75, 88, 1127, 1568, 1595
ScrFI CCNGG 3 cut(s) 670, 960, 1084
SduI GDGCHC 1 cut(s) 1004
SfaNI GCATC 1 cut(s) 999
SfcI CTRYAG 4 cut(s) 157, 603, 1021, 1393
SinI GGWCC 2 cut(s) 464, 956
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 1645
SspMI CTAG 2 cut(s) 129, 1356
StyD4I CCNGG 3 cut(s) 668, 958, 1082
StyI CCWWGG 3 cut(s) 467, 813, 1004
TaaI ACNGT 5 cut(s) 604, 946, 1051, 1165, 1651
TaiI ACGT 2 cut(s) 16, 491
TaqI TCGA 3 cut(s) 5, 69, 696
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 4 cut(s) 7, 142, 740, 1359
Tru1I TTAA 8 cut(s) 353, 582, 591, 707, 987, 1443, 1653, 1699
Tru9I TTAA 8 cut(s) 353, 582, 591, 707, 987, 1443, 1653, 1699
TscAI CASTG 4 cut(s) 52, 153, 1054, 1402
TseFI GTSAC 2 cut(s) 35, 1043
TseI GCWGC 6 cut(s) 104, 282, 574, 798, 1392, 1631
Tsp45I GTSAC 2 cut(s) 35, 1043
TspDTI ATGAA 9 cut(s) 245, 403, 458, 542, 546, 780, 965, 1382, 1406
TspRI CASTG 4 cut(s) 52, 153, 1054, 1402
Tth111I GACNNNGTC 1 cut(s) 857
VpaK11BI GGWCC 2 cut(s) 464, 956
XapI RAATTY 9 cut(s) 422, 533, 564, 621, 677, 1192, 1231, 1270, 1524
XbaI TCTAGA 1 cut(s) 1355
XceI RCATGY 2 cut(s) 978, 1645
XmiI GTMKAC 1 cut(s) 1226
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 129, 1356
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.