Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

31087466 .. 31087761

Gene Structure 296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTCACCTCTCTCAAGTGTAATTTCTTTTCTTTCATCCAGATTGCAGGTGGTTCTGGTATTACTCCAATGCTTCAGGTCATTGACACTACACTAAAAAATCTTGATGACACAACCAAGTCATTCTTGTGTTCAATCAGACCACTTTTGGTAATTGTGGGGGTCTTGGTGTTTAGGGCCAGCGATAAGTGTCAGAAGGAGAAGAGGAAGCATGCACTTATCCTGCATTTTCAAAGGAGCAAGCGAGTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

84

Amino Acids

9.49

Weight (kDa)

10.04

Isoelectric Point (pI)

16.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	135, 233
Alw21I	GWGCWC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	177
ApaLI	GTGCAC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	177
BseGI	GGATG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	181, 213, 242
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	215
BstPI	GGTNACC	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	181, 213, 242
Cfr13I	GGNCC	1 cut(s)	177
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	1 cut(s)	179
CviKI_1	RGCY	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
FaeI	CATG	1 cut(s)	215
FaiI	YATR	1 cut(s)	213
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	211
FokI	GGATG	1 cut(s)	23
FspBI	CTAG	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	140, 195
Hpy188III	TCNNGA	2 cut(s)	40, 104
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	47, 215, 226, 250
Hsp92II	CATG	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	6 cut(s)	33, 42, 53, 62, 193, 236
MaeI	CTAG	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	22, 153
MnlI	CCTC	2 cut(s)	19, 198
MslI	CAYNNNNRTG	1 cut(s)	127
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	38
PspEI	GGTNACC	1 cut(s)	4
PspPI	GGNCC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	3 cut(s)	11, 52, 81
SmiMI	CAYNNNNRTG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	22, 153
SspMI	CTAG	1 cut(s)	253
TasI	AATT	2 cut(s)	22, 153
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	25
VneI	GTGCAC	1 cut(s)	248
XceI	RCATGY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.