Rroxscaffold_5G00370220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001198
Physical Location & Seq
Reverse (-)
51872827 .. 51876730
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370220.1

Sequence Viewer

Length: 402 bp
ATGGGTTGGAGAGATATTGGATTGTCTTTTATAGCTGTTGAAGCTCCACGGTGGCTTTTGACACAGCCGTTGGAGATGAAGGACATGGTTACACTTTTGAAGAGATTCAAGGGTGCAAGAAGGTCTTCAAAGGTGTTGGACATTGATGAGGGCTACGGAAAGAATGTGTTGGAGATGATGGAGCTTGCTTCTTGGCTTCAAAGCTTGAACAATAGAGAGGATCCGAAATTTAGAGATTGGGCCTTGAAAATTGCATATATTGAAGAAGTTGGGAAGACCAGGTTTTTAAAACTCCAGGCAGAGGTTTGGGAGTTCAAGGATTTTGCTAACCAACTCCAGCATCTTCCGCAGCTGCAACTGAAACAATCACCTTTTGAACAACTGGAGCACTTACTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.77

Weight (kDa)

6.75

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 347
AclWI GGATC 2 cut(s) 215, 228
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 301
AjnI CCWGG 2 cut(s) 278, 294
AluBI AGCT 5 cut(s) 35, 44, 184, 204, 352
AluI AGCT 5 cut(s) 35, 44, 184, 204, 352
Alw21I GWGCWC 1 cut(s) 390
AlwI GGATC 2 cut(s) 215, 228
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 349, 352
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 2 cut(s) 104, 124
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 360
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 117, 281
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 339, 361
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 280, 296
BisI GCNGC 2 cut(s) 350, 353
BlsI GCNGC 2 cut(s) 351, 354
Bme1390I CCNGG 2 cut(s) 280, 296
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 280, 296
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 117, 281
BpmI CTGGAG 2 cut(s) 278, 320
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 280, 296
BseDI CCNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 339, 361
BshFI GGCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 301
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 215, 228
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 280, 296
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 47
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 41, 346
BstNI CCWGG 2 cut(s) 280, 296
BstSCI CCNGG 2 cut(s) 278, 294
BstV1I GCAGC 2 cut(s) 339, 361
BstV2I GAAGAC 2 cut(s) 117, 281
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 240
CsiI ACCWGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 85
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 278, 294
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 32, 86, 256, 258
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 350, 353
Fsp4HI GCNGC 2 cut(s) 350, 353
GluI GCNGC 2 cut(s) 350, 353
GsuI CTGGAG 2 cut(s) 278, 320
HaeIII GGCC 1 cut(s) 242
Hin1II CATG 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 1 cut(s) 105
HphI GGTGA 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 73, 114
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 116, 254, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 346
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 3 cut(s) 49, 181, 385
LpnPI CCDG 6 cut(s) 265, 281, 292, 308, 350, 368
Lsp1109I GCAGC 2 cut(s) 339, 361
LweI GCATC 1 cut(s) 349
MabI ACCWGGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 5 cut(s) 112, 117, 275, 286, 335
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 227, 249
MmeI TCCRAC 3 cut(s) 51, 117, 150
MnlI CCTC 3 cut(s) 142, 211, 295
MroXI GAANNNNTTC 2 cut(s) 104, 124
MseI TTAA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 352
MspR9I CCNGG 2 cut(s) 280, 296
MvaI CCWGG 2 cut(s) 280, 296
MwoI GCNNNNNNNGC 2 cut(s) 41, 346
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 104, 124
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 351, 354
Psp6I CCWGG 2 cut(s) 278, 294
PspGI CCWGG 2 cut(s) 278, 294
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 2 cut(s) 350, 353
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 2 cut(s) 280, 296
SduI GDGCHC 1 cut(s) 390
SexAI ACCWGGT 1 cut(s) 278
SfaNI GCATC 1 cut(s) 349
Sse9I AATT 2 cut(s) 227, 249
SsiI CCGC 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 278, 294
TaaI ACNGT 1 cut(s) 51
TasI AATT 2 cut(s) 227, 249
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseI GCWGC 2 cut(s) 349, 352
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 171
XapI RAATTY 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 104, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.