RLG00000011478

Belongs to the MCM family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
9804024 .. 9805340
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011478

Sequence Viewer

Length: 342 bp
ATGAAGAAGCATATTGGCATGATTGCAGGTGGTTCTGGTATTACTCCAATGCTTCAGGTCATTGACGCTACACTAAAAAATCTTGATGACACAACCAAGGTTACTGGGATATATCGGGCTTTGAGCGTAAGAGTTGGACCAACACAGAGAACTGCAAAATCATTATTCAAGACTTACATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCTAGAATGCTGGCGGAGGCGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTGATGAAAAGAGGAAATCCTTTGTATCTGCTGGTCATCTTCGTTGGCATTTTACTCTTTAA

Protein Analysis

114

Amino Acids

12.58

Weight (kDa)

9.52

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 7 - 38 4.1e-06 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AciI CCGC 1 cut(s) 224
AcsI RAATTY 2 cut(s) 247, 262
AcuI CTGAAG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 169
ApoI RAATTY 2 cut(s) 247, 262
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 137
AvaII GGWCC 1 cut(s) 137
BfaI CTAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 96, 252
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 96, 252
BseNI ACTGG 1 cut(s) 109
BsmI GAATGC 1 cut(s) 222
BspACI CCGC 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 96, 252
BssT1I CCWWGG 2 cut(s) 96, 252
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 222
BstHHI GCGC 1 cut(s) 232
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 74
CviAII CATG 1 cut(s) 19
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 96, 252
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 96, 252
ErhI CCWWGG 2 cut(s) 96, 252
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 12, 20, 112, 192, 194
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 1 cut(s) 18
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 231
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 205, 268
Hpy188III TCNNGA 3 cut(s) 83, 169, 213
HpyCH4V TGCA 3 cut(s) 26, 155, 190
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 230
LpnPI CCDG 6 cut(s) 12, 21, 41, 90, 206, 297
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 3 cut(s) 16, 281, 311
MluCI AATT 2 cut(s) 247, 262
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 220, 285
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 1 cut(s) 340
Mva1269I GAATGC 1 cut(s) 222
NlaIII CATG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 17
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 340
Sau96I GGNCC 1 cut(s) 137
SetI ASST 3 cut(s) 31, 60, 102
SinI GGWCC 1 cut(s) 137
Sse9I AATT 2 cut(s) 247, 262
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 213
StyI CCWWGG 2 cut(s) 96, 252
TasI AATT 2 cut(s) 247, 262
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 17, 300
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 2 cut(s) 247, 262
XbaI TCTAGA 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.