RLG00000032827

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001198
Physical Location & Seq
Reverse (-)
19487354 .. 19489555
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032827

Sequence Viewer

Length: 750 bp
ATGGGCAACGCTCAGTCACCTCCTCATGGAGATCCTCGCTTTACTTCAGCCTCCAGAGCTTTCACTCATATTGAGCTTGAAGATCTCAAGTCCCTACTTGAGTCCTTGGCTGCTCAGTCACACAATGACGGCCAATTTATCTCTCCCTCAGTTTTTCAGACTTATTTGGGGCTTCATGGTCCTCTTAAGGATAAGATGTTTGATTTAGTAACCCAGCAGCGGAAAGACCAGAAGCTCACATTTGAAGACCTAGTGGTAGCCAAAGGGACTTATGAGAAGGGAACAAGGGATGATATTGAACAGTTCATATATAAATTGTTGGACATAAACGGCGATGGTGTTTTGGGGAGAAATCCTTTGTATCTGCTGGTCATCTTCGTTGGCTTTTTACTCTTTAATGCACTATGGATGCAGCTAGACACCTCGGCCGAATTCCGCATTGGCGCTGTTCTCAAATATGAGAATTGTAAAATGTTTTACCAGAGTTGCCCTAATAATTGTTGGCTAATGTGGCTACAACTTCCGGGACTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATAAAGGGGCAGCAGCTACTGCAGATAACAATCCTCAAAGAAACCCTGCAGTAGCATTAAAGAGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCATCTACTGCCTCATCAGAAGTGACGGAATCTAAATACTCTAGTCCTTCAAAACAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

250

Amino Acids

27.58

Weight (kDa)

6.43

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 553
AciI CCGC 2 cut(s) 220, 436
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 2 cut(s) 130, 426
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 26, 219
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 4 cut(s) 80, 245, 299, 738
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 5 cut(s) 59, 76, 235, 415, 605
AluI AGCT 5 cut(s) 59, 76, 235, 415, 605
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 2 cut(s) 130, 426
ApeKI GCWGC 5 cut(s) 110, 217, 412, 599, 602
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 674
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 97, 229, 424, 611, 614
BccI CCATC 1 cut(s) 329
BceAI ACGGC 2 cut(s) 145, 346
BcnI CCSGG 1 cut(s) 525
BfaI CTAG 4 cut(s) 251, 416, 675, 729
BfmI CTRYAG 2 cut(s) 609, 636
BfoI RGCGCY 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 82
BisI GCNGC 5 cut(s) 111, 218, 413, 600, 603
BlsI GCNGC 5 cut(s) 112, 219, 414, 601, 604
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 399
BmtI GCTAGC 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 71, 119
BpuMI CCSGG 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 105, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 219
Bse3DI GCAATG 1 cut(s) 667
Bse8I GATNNNNATC 1 cut(s) 618
BseDI CCNNGG 2 cut(s) 105, 423
BseGI GGATG 2 cut(s) 295, 414
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 26, 219
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 26, 128, 162
BseRI GAGGAG 1 cut(s) 12
BseX3I CGGCCG 1 cut(s) 426
BseXI GCAGC 5 cut(s) 97, 229, 424, 611, 614
BseYI CCCAGC 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 132, 428
BshNI GGYRCC 1 cut(s) 553
BsiEI CGRYCG 1 cut(s) 429
BsiSI CCGG 1 cut(s) 524
BslFI GGGAC 3 cut(s) 76, 280, 540
BslI CCNNNNNNNGG 2 cut(s) 26, 219
BsmFI GGGAC 3 cut(s) 76, 280, 540
BsnI GGCC 2 cut(s) 132, 428
Bsp143I GATC 2 cut(s) 31, 82
BspACI CCGC 2 cut(s) 220, 436
BspANI GGCC 2 cut(s) 132, 428
BspCNI CTCAG 3 cut(s) 25, 127, 161
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 555
BspMAI CTGCAG 2 cut(s) 613, 640
BspOI GCTAGC 1 cut(s) 678
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 105, 423
BssMI GATC 2 cut(s) 31, 82
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 572
BstAFI CTTAAG 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 676
BstDEI CTNAG 3 cut(s) 12, 114, 148
BstF5I GGATG 2 cut(s) 295, 414
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 2 cut(s) 34, 85
BstMBI GATC 2 cut(s) 31, 82
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 3 cut(s) 56, 511, 608
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 2 cut(s) 609, 636
BstV1I GCAGC 5 cut(s) 97, 229, 424, 611, 614
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 31, 82
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 2 cut(s) 31, 82
BstZI CGGCCG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 132, 428
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 295, 414
Cac8I GCNNGC 1 cut(s) 676
CaiI CAGNNNCTG 1 cut(s) 608
CciI TCATGA 1 cut(s) 564
CfoI GCGC 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 179
CviAII CATG 5 cut(s) 26, 176, 565, 571, 685
DdeI CTNAG 3 cut(s) 12, 114, 148
DpnI GATC 2 cut(s) 33, 84
DpnII GATC 2 cut(s) 31, 82
EaeI YGGCCR 2 cut(s) 130, 426
EagI CGGCCG 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
EclXI CGGCCG 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 5 cut(s) 29, 179, 568, 574, 688
FaqI GGGAC 3 cut(s) 76, 280, 540
FatI CATG 5 cut(s) 25, 175, 564, 570, 684
Fnu4HI GCNGC 5 cut(s) 111, 218, 413, 600, 603
FokI GGATG 2 cut(s) 302, 421
Fsp4HI GCNGC 5 cut(s) 111, 218, 413, 600, 603
FspBI CTAG 4 cut(s) 251, 416, 675, 729
GlaI GCGC 1 cut(s) 445
GluI GCNGC 5 cut(s) 111, 218, 413, 600, 603
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 2 cut(s) 132, 428
HapII CCGG 1 cut(s) 524
HhaI GCGC 1 cut(s) 446
Hin1II CATG 5 cut(s) 29, 179, 568, 574, 688
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 2 cut(s) 101, 716
HpaII CCGG 1 cut(s) 524
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 2 cut(s) 159, 706
Hpy188III TCNNGA 2 cut(s) 54, 565
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 2 cut(s) 271, 744
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 401, 412, 611, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 511, 608
HpyF3I CTNAG 3 cut(s) 12, 114, 148
Hsp92II CATG 5 cut(s) 29, 179, 568, 574, 688
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 31, 82
LmnI GCTCC 1 cut(s) 665
LpnPI CCDG 7 cut(s) 67, 227, 242, 353, 494, 537, 648
Lsp1109I GCAGC 5 cut(s) 97, 229, 424, 611, 614
LweI GCATC 1 cut(s) 399
MaeI CTAG 4 cut(s) 251, 416, 675, 729
MaeIII GTNAC 4 cut(s) 15, 117, 208, 709
MalI GATC 2 cut(s) 33, 84
MboI GATC 2 cut(s) 31, 82
MboII GAAGA 4 cut(s) 92, 257, 367, 589
MflI RGATCY 2 cut(s) 31, 82
MluCI AATT 5 cut(s) 134, 314, 431, 463, 496
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 9 cut(s) 30, 33, 45, 61, 157, 192, 433, 633, 709
MseI TTAA 3 cut(s) 186, 396, 647
MslI CAYNNNNRTG 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 220
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 525
MwoI GCNNNNNNNGC 3 cut(s) 56, 511, 608
NciI CCSGG 1 cut(s) 525
NdeII GATC 2 cut(s) 31, 82
NheI GCTAGC 1 cut(s) 674
NlaIII CATG 5 cut(s) 29, 179, 568, 574, 688
NlaIV GGNNCC 1 cut(s) 555
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 3 cut(s) 15, 117, 709
PagI TCATGA 1 cut(s) 564
PfeI GAWTC 1 cut(s) 716
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 5 cut(s) 112, 219, 414, 601, 604
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 1 cut(s) 179
PstI CTGCAG 2 cut(s) 613, 640
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 2 cut(s) 31, 82
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 3 cut(s) 186, 396, 647
SatI GCNGC 5 cut(s) 111, 218, 413, 600, 603
Sau3AI GATC 2 cut(s) 31, 82
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 525
SetI ASST 8 cut(s) 22, 61, 78, 237, 252, 417, 425, 607
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 2 cut(s) 609, 636
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 3 cut(s) 86, 98, 185
SmoI CTYRAG 3 cut(s) 86, 98, 185
Sse9I AATT 5 cut(s) 134, 314, 431, 463, 496
SsiI CCGC 2 cut(s) 220, 436
SspMI CTAG 4 cut(s) 251, 416, 675, 729
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 303
TasI AATT 5 cut(s) 134, 314, 431, 463, 496
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 3 cut(s) 186, 396, 647
Tru9I TTAA 3 cut(s) 186, 396, 647
TseFI GTSAC 3 cut(s) 15, 117, 709
TseI GCWGC 5 cut(s) 110, 217, 412, 599, 602
Tsp45I GTSAC 3 cut(s) 15, 117, 709
TspDTI ATGAA 4 cut(s) 164, 295, 581, 590
TspGWI ACGGA 1 cut(s) 728
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 431
XspI CTAG 4 cut(s) 251, 416, 675, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.