Rh1BG034000

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001198
Physical Location & Seq
Reverse (-)
4642202 .. 4654854
12653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG034000.1

Sequence Viewer

Length: 528 bp
ATGAGGATTGGAGGTTTGATCACAACGCTTGGCAAGGGTGGAGGCTTTAGATTGATCGGAGGGTTGCTCGGATTGATGACGTGGTATATTCAGGCAGAAAGAGGAGGTGGGTGGAGTGGATTGTCGTCTAGGTTGTCGGATTGTGACAACTCTTGCGGCGGGTCACGGGATGGTGGTGTGACTCTCGGGTCCGATTGCGATGGCCCGATGGAGATCCAGATTAGAGCGGTTGGTGGTTGTAGGGAGCAAACTTGGACAAGTAGGAAGCGGCCTTGGGTGCATTGGAGAGCTTTCACTCATACTGAGCTTGAAGATCTCAGGTCCCTGCTTGCGTCGTTAGCTGCTCAGTCACATAGCGACGGCCAATTCATCTCTCCCTCAGTTTTCAGTTGGAGCTCAAAAGTTGCATATATTCAAGAAGCCGTGAAGACCAGGTTTTTTAAACTCCTAGAGGCAGAGGTTTGGGAGTTTAAGGATTGTGTTCCAAGGTTGGTATTCTGTGTGTATATTGGAGAGAAGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

175

Amino Acids

19.33

Weight (kDa)

7.61

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 227
AciI CCGC 4 cut(s) 156, 159, 227, 268
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 1 cut(s) 361
AgsI TTSAA 2 cut(s) 311, 416
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 4 cut(s) 290, 307, 341, 396
AluI AGCT 4 cut(s) 290, 307, 341, 396
Alw21I GWGCWC 1 cut(s) 398
AlwI GGATC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 3 cut(s) 202, 269, 361
ApeKI GCWGC 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 189, 203, 321
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 2 cut(s) 189, 321
BanII GRGCYC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 328
BccI CCATC 3 cut(s) 164, 194, 202
BceAI ACGGC 2 cut(s) 376, 407
BciT130I CCWGG 1 cut(s) 433
BclI TGATCA 1 cut(s) 18
BfaI CTAG 2 cut(s) 129, 449
BglII AGATCT 1 cut(s) 313
BisI GCNGC 3 cut(s) 157, 269, 342
BlsI GCNGC 3 cut(s) 158, 270, 343
Bme1390I CCNGG 1 cut(s) 433
Bme18I GGWCC 2 cut(s) 189, 321
BmeT110I CYCGRG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 3 cut(s) 189, 203, 321
BmiI GGNNCC 2 cut(s) 190, 323
BmrFI CCNGG 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BsaBI GATNNNNATC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 272, 485
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 272, 485
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 212
BseMII CTCAG 4 cut(s) 294, 331, 359, 393
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 3 cut(s) 204, 271, 363
BsiHKAI GWGCWC 1 cut(s) 398
BsiHKCI CYCGRG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 3 cut(s) 204, 271, 363
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 4 cut(s) 18, 54, 213, 313
BspACI CCGC 4 cut(s) 156, 159, 227, 268
BspANI GGCC 3 cut(s) 204, 271, 363
BspCNI CTCAG 4 cut(s) 295, 330, 358, 392
BspLI GGNNCC 2 cut(s) 190, 323
BspPI GGATC 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 272, 485
BssMI GATC 4 cut(s) 18, 54, 213, 313
BssT1I CCWWGG 2 cut(s) 272, 485
Bst2UI CCWGG 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 4 cut(s) 303, 317, 345, 379
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 4 cut(s) 21, 57, 216, 316
BstMBI GATC 4 cut(s) 18, 54, 213, 313
BstMWI GCNNNNNNNGC 2 cut(s) 277, 338
BstNI CCWGG 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 213, 313
BstYI RGATCY 2 cut(s) 213, 313
BsuRI GGCC 3 cut(s) 204, 271, 363
BtgZI GCGATG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 189, 203, 321
CseI GACGC 1 cut(s) 321
CsiI ACCWGGT 1 cut(s) 431
CviJI RGCY 9 cut(s) 45, 204, 271, 290, 307, 341, 363, 396, 422
CviKI_1 RGCY 9 cut(s) 45, 204, 271, 290, 307, 341, 363, 396, 422
DdeI CTNAG 4 cut(s) 303, 317, 345, 379
DpnI GATC 4 cut(s) 20, 56, 215, 315
DpnII GATC 4 cut(s) 18, 54, 213, 313
DraI TTTAAA 1 cut(s) 442
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 272, 485
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 189, 321
Eco53kI GAGCTC 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 2 cut(s) 272, 485
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 272, 485
FaiI YATR 6 cut(s) 87, 300, 354, 409, 411, 507
FaqI GGGAC 1 cut(s) 307
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 157, 269, 342
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 3 cut(s) 157, 269, 342
FspBI CTAG 2 cut(s) 129, 449
GluI GCNGC 3 cut(s) 157, 269, 342
HaeIII GGCC 3 cut(s) 204, 271, 363
HgaI GACGC 1 cut(s) 321
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 59, 71, 139, 193
Hpy188III TCNNGA 2 cut(s) 217, 416
Hpy99I CGWCG 2 cut(s) 337, 362
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 280, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 338
HpyF3I CTNAG 4 cut(s) 303, 317, 345, 379
HpySE526I ACGT 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 54, 213, 313
LmnI GCTCC 2 cut(s) 244, 393
LpnPI CCDG 6 cut(s) 77, 230, 304, 338, 418, 445
Lsp1109I GCAGC 1 cut(s) 328
MabI ACCWGGT 1 cut(s) 431
MaeI CTAG 2 cut(s) 129, 449
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 4 cut(s) 143, 162, 178, 348
MalI GATC 4 cut(s) 20, 56, 215, 315
MbiI CCGCTC 1 cut(s) 227
MboI GATC 4 cut(s) 18, 54, 213, 313
MboII GAAGA 2 cut(s) 323, 439
MflI RGATCY 2 cut(s) 213, 313
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 1 cut(s) 365
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 117, 371
MnlI CCTC 8 cut(s) 5, 35, 53, 95, 98, 388, 445, 451
MseI TTAA 2 cut(s) 441, 471
MspR9I CCNGG 1 cut(s) 433
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 277, 338
NdeII GATC 4 cut(s) 18, 54, 213, 313
NlaIV GGNNCC 2 cut(s) 190, 323
NmuCI GTSAC 4 cut(s) 143, 162, 178, 348
PkrI GCNGC 3 cut(s) 158, 270, 343
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 190, 323
PspPI GGNCC 3 cut(s) 189, 203, 321
PspPPI RGGWCCY 1 cut(s) 321
PsuI RGATCY 2 cut(s) 213, 313
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 441, 471
SatI GCNGC 3 cut(s) 157, 269, 342
Sau3AI GATC 4 cut(s) 18, 54, 213, 313
Sau96I GGNCC 3 cut(s) 189, 203, 321
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 433
SduI GDGCHC 1 cut(s) 398
SexAI ACCWGGT 1 cut(s) 431
SinI GGWCC 2 cut(s) 189, 321
Sse9I AATT 1 cut(s) 365
SsiI CCGC 4 cut(s) 156, 159, 227, 268
SspMI CTAG 2 cut(s) 129, 449
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 2 cut(s) 272, 485
TaiI ACGT 1 cut(s) 83
TasI AATT 1 cut(s) 365
TauI GCSGC 2 cut(s) 159, 271
Tru1I TTAA 2 cut(s) 441, 471
Tru9I TTAA 2 cut(s) 441, 471
TseFI GTSAC 4 cut(s) 143, 162, 178, 348
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 4 cut(s) 143, 162, 178, 348
TspDTI ATGAA 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 189, 321
XspI CTAG 2 cut(s) 129, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.