Rh1AG016700

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
2857609 .. 2860739
3131 bp
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UTR
Exon/CDS
Intron
Rh1AG016700.1

Sequence Viewer

Length: 294 bp
ATGGCTTCCATTTTTATCCCAGTCTTAGTTGTATGGAAGGATACTAGAAGACCCATTGAAAAGCTGAGATATGTTCCCAACATGAAGAAGCATATTAGCATGATTGCAGGTGGTTCTTGTATTACTTCAATTCTTCAAGTCATTGACGCTATACTTCAAAATCTTGTTGAGACAACAAGACCACTTTTGGTAACTGTGAGGGTTTTGGTGTTTAGGGCCAGCGATAAGTGTCAGAAGGAGAAGAGAAAGCATGCACTTATGCAGCATTTTCAAAGGAGCAAGCTAGTGCGCTAG

Protein Analysis

97

Amino Acids

11.24

Weight (kDa)

10.77

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 98
AgsI TTSAA 5 cut(s) 59, 129, 137, 158, 272
AluBI AGCT 2 cut(s) 64, 283
AluI AGCT 2 cut(s) 64, 283
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 274
BciVI GTATCC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 3 cut(s) 45, 284, 292
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 218
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 220, 252, 281
BstDEI CTNAG 2 cut(s) 25, 65
BstHHI GCGC 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 55
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 218
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 220, 252, 281
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 155
CviAII CATG 3 cut(s) 82, 100, 251
CviJI RGCY 4 cut(s) 5, 64, 218, 283
CviKI_1 RGCY 4 cut(s) 5, 64, 218, 283
DdeI CTNAG 2 cut(s) 25, 65
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
FaeI CATG 3 cut(s) 85, 103, 254
FaiI YATR 8 cut(s) 34, 72, 83, 93, 101, 152, 252, 260
FatI CATG 3 cut(s) 81, 99, 250
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 3 cut(s) 45, 284, 292
GlaI GCGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 218
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 291
Hin1II CATG 3 cut(s) 85, 103, 254
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 31, 229
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 107, 254, 262
HpyF3I CTNAG 2 cut(s) 25, 65
Hsp92II CATG 3 cut(s) 85, 103, 254
HspAI GCGC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 3 cut(s) 33, 93, 232
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 3 cut(s) 45, 284, 292
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 4 cut(s) 60, 97, 125, 253
MluCI AATT 1 cut(s) 129
MnlI CCTC 1 cut(s) 192
NlaIII CATG 3 cut(s) 85, 103, 254
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 216
SatI GCNGC 1 cut(s) 263
Sau96I GGNCC 1 cut(s) 216
SetI ASST 3 cut(s) 66, 112, 285
SphI GCATGC 1 cut(s) 254
Sse9I AATT 1 cut(s) 129
SspMI CTAG 3 cut(s) 45, 284, 292
TaaI ACNGT 1 cut(s) 196
TasI AATT 1 cut(s) 129
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 98
XceI RCATGY 1 cut(s) 254
XspI CTAG 3 cut(s) 45, 284, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.