Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

30536752 .. 30554701

Gene Structure 17950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAATTTCCCAAATTGGGTTACTGGGATATATCGGGCTTTGAGCGTAAGAGTTGGACCAACACAGAGAACTGCAAAATCATTATTCAAGACTTACATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCTAGAATGCTGGCGGAGGCGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTTATGAAAAGAGGCAACAAAAGCATAAAATTGTGAGGAGGAAAAAGAAGGATACATATGATGAGGATTTTGATCATGATGATTTGGACAAGCTGCCACCCAATTTGTCTCCACCACTTAAGACGTTGGCCACATGGGCTAATGATAACTTGAAGGATGGGATCACCATCCACACAACCTTAGGCGAGGAATTATTTGGATATCAAAAGAAGGTCGCCATCTTCAGAAGGAATGTGTATGCCATGATCAACATGAAGGAGCTTTCTGCCGGCAACGTTGTGATGTATATGAGGTCTGTAATGCATTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

170

Amino Acids

19.76

Weight (kDa)

9.42

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	3 cut(s)	4, 166, 181
AcuI	CTGAAG	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	88, 352
AluBI	AGCT	2 cut(s)	292, 460
AluI	AGCT	2 cut(s)	292, 460
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	3 cut(s)	4, 166, 181
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	3 cut(s)	350, 374, 425
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	2 cut(s)	271, 444
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BsaBI	GATNNNNATC	2 cut(s)	270, 365
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	379
Bse8I	GATNNNNATC	2 cut(s)	270, 365
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	361, 366
BseJI	GATNNNNATC	2 cut(s)	270, 365
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	271, 360, 444
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	274
BspPI	GGATC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	271, 360, 444
BssT1I	CCWWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	141, 469
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	361, 366
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	274, 363, 447
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	271, 360, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 335
BstV1I	GCAGC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	361, 366
Cac8I	GCNNGC	2 cut(s)	141, 469
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	4 cut(s)	275, 333, 442, 451
CviJI	RGCY	5 cut(s)	38, 292, 329, 338, 460
CviKI_1	RGCY	5 cut(s)	38, 292, 329, 338, 460
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	3 cut(s)	273, 362, 446
DpnII	GATC	3 cut(s)	271, 360, 444
DraI	TTTAAA	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	4 cut(s)	278, 336, 445, 454
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	4 cut(s)	274, 332, 441, 450
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	2 cut(s)	271, 444
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	353, 368
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	278, 336, 445, 454
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	124, 187, 425
Hpy188III	TCNNGA	3 cut(s)	88, 132, 275
HpyAV	CCTTC	5 cut(s)	241, 346, 403, 420, 448
HpyCH4IV	ACGT	2 cut(s)	323, 474
HpyCH4V	TGCA	3 cut(s)	74, 109, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 335
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	2 cut(s)	323, 474
Hsp92II	CATG	4 cut(s)	278, 336, 445, 454
HspAI	GCGC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Ksp22I	TGATCA	2 cut(s)	271, 444
Kzo9I	GATC	3 cut(s)	271, 360, 444
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	3 cut(s)	9, 125, 481
Lsp1109I	GCAGC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	323, 474
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	273, 362, 446
MboI	GATC	3 cut(s)	271, 360, 444
MboII	GAAGA	2 cut(s)	200, 412
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	7 cut(s)	4, 13, 166, 181, 228, 301, 389
MluNI	TGGCCA	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	7 cut(s)	139, 204, 228, 231, 256, 379, 483
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	1 cut(s)	504
MroNI	GCCGGC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	2 cut(s)	318, 507
Msp20I	TGGCCA	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	220, 335
NaeI	GCCGGC	1 cut(s)	469
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	3 cut(s)	271, 360, 444
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	4 cut(s)	278, 336, 445, 454
NsiI	ATGCAT	1 cut(s)	504
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	318, 507
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	271, 360, 444
Sau96I	GGNCC	1 cut(s)	56
SetI	ASST	7 cut(s)	294, 326, 380, 414, 462, 477, 494
SinI	GGWCC	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	7 cut(s)	4, 13, 166, 181, 228, 301, 389
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	2 cut(s)	326, 477
TasI	AATT	7 cut(s)	4, 13, 166, 181, 228, 301, 389
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	318, 507
Tru9I	TTAA	2 cut(s)	318, 507
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	17, 219, 467
TspGWI	ACGGA	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	3 cut(s)	4, 166, 181
XbaI	TCTAGA	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.