Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

31839792 .. 31840494

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG304400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTTACTGGGATATATCGGGCTTTGAGCGTAAGAGTTGGACCAACACAGAGAACTGCAAAATCATTATTCAAGACTTACATTGATTGTCTGCATATAAAAAAGTCTGACAAGTCTAGAATGCTGGCGGAGGCGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTTATGAAAAGAGGGTACATACTTTTCTTGTACCAAGGATAGATGAGGTTTGGGAATATCTAGTGAAATGTTGCCTAAAGAGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

90

Amino Acids

10.41

Weight (kDa)

8.84

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	151, 166
AfaI	GTAC	2 cut(s)	201, 216
AgsI	TTSAA	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	151, 166
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	117, 245
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	156, 218
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	156, 218
BseNI	ACTGG	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	156, 218
BssT1I	CCWWGG	2 cut(s)	156, 218
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	200, 215
CviJI	RGCY	1 cut(s)	23
CviKI_1	RGCY	1 cut(s)	23
CviQI	GTAC	2 cut(s)	200, 215
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	156, 218
Eco47I	GGWCC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	156, 218
ErhI	CCWWGG	2 cut(s)	156, 218
FaiI	YATR	5 cut(s)	16, 96, 98, 189, 204
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FspBI	CTAG	2 cut(s)	117, 245
GlaI	GCGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	2 cut(s)	178, 265
Hpy188I	TCNGA	2 cut(s)	109, 172
Hpy188III	TCNNGA	2 cut(s)	73, 117
HpyCH4V	TGCA	2 cut(s)	59, 94
HspAI	GCGC	1 cut(s)	134
LpnPI	CCDG	1 cut(s)	110
MaeI	CTAG	2 cut(s)	117, 245
MaeIII	GTNAC	2 cut(s)	4, 266
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	2 cut(s)	151, 166
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	3 cut(s)	124, 189, 223
MroXI	GAANNNNTTC	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	201, 216
RsaNI	GTAC	2 cut(s)	200, 215
Sau96I	GGNCC	1 cut(s)	41
SetI	ASST	1 cut(s)	234
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	2 cut(s)	151, 166
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	117, 245
StyI	CCWWGG	2 cut(s)	156, 218
TasI	AATT	2 cut(s)	151, 166
TfiI	GAWTC	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	2 cut(s)	151, 166
XbaI	TCTAGA	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	117, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.