Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

20466188 .. 20470920

Gene Structure 4733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG184700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCTTCAGATCAAATTCGAAATCAAGAGATGCAGTTCACCTATGGAATCAATGATTTACCAAAGTGTGATGGTAGTGGAGGACGCATATGAAGTGTTCGATGAATTACCTTTGAAAGATGTGATGCTTTGGAATAGAATGATCAATTGGTTTTCCGAGATTGGGCAGTTGAGGAGGCTTTGCTGGTCACTAGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

66

Amino Acids

7.92

Weight (kDa)

4.89

Isoelectric Point (pI)

68.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
ApoI	RAATTY	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	30
AsuII	TTCGAA	1 cut(s)	18
BccI	CCATC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	20, 114
Bpu14I	TTCGAA	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	9, 141
BspT104I	TTCGAA	1 cut(s)	18
BssMI	GATC	2 cut(s)	9, 141
BstBI	TTCGAA	1 cut(s)	18
BstKTI	GATC	2 cut(s)	12, 144
BstMBI	GATC	2 cut(s)	9, 141
CseI	GACGC	1 cut(s)	92
CviJI	RGCY	1 cut(s)	178
CviKI_1	RGCY	1 cut(s)	178
DpnI	GATC	2 cut(s)	11, 143
DpnII	GATC	2 cut(s)	9, 141
FaiI	YATR	3 cut(s)	44, 88, 90
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	141
FspBI	CTAG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	9, 157
Hpy188III	TCNNGA	2 cut(s)	25, 198
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	9, 141
LpnPI	CCDG	1 cut(s)	169
LweI	GCATC	2 cut(s)	20, 114
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	11, 143
MboI	GATC	2 cut(s)	9, 141
MfeI	CAATTG	1 cut(s)	145
MluCI	AATT	3 cut(s)	14, 104, 145
MnlI	CCTC	3 cut(s)	73, 165, 168
MunI	CAATTG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	2 cut(s)	9, 141
NmuCI	GTSAC	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	9, 141
SetI	ASST	2 cut(s)	43, 112
SfaNI	GCATC	2 cut(s)	20, 114
SfuI	TTCGAA	1 cut(s)	18
SgeI	CNNG	3 cut(s)	37, 169, 196
Sse9I	AATT	3 cut(s)	14, 104, 145
SspMI	CTAG	1 cut(s)	191
TaqI	TCGA	2 cut(s)	18, 99
TasI	AATT	3 cut(s)	14, 104, 145
TfiI	GAWTC	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	105, 117
XapI	RAATTY	1 cut(s)	14
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.