Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

19874614 .. 19876083

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAAGAAGCATATTGGCATGATTGCAGGTGGTTCTGGTATTACTCCAATGCTTCAGGTCATTGACGCTACACTAAAAAATCTTGATGACACAACCAAGGTTACTGGGATATATCGGGCTTTGAGCGTAAGAGTTGGACCAACACAGAGAACTGCAAAATCATTATTCAAGGCATACTTCTATCTTTTACTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

65

Amino Acids

7.17

Weight (kDa)

10.28

Isoelectric Point (pI)

11.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	7 - 36	2.2e-06	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	1 cut(s)	74
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	1 cut(s)	119
CviKI_1	RGCY	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	12, 20, 112, 175
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	26, 155
Hsp92II	CATG	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	12, 21, 41, 90
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	115
MseI	TTAA	1 cut(s)	196
NlaIII	CATG	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	137
SetI	ASST	3 cut(s)	31, 60, 102
SgeI	CNNG	9 cut(s)	31, 39, 48, 68, 95, 109, 117, 128, 181
SinI	GGWCC	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.