Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

66386274 .. 66386957

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG470100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAAAGAAGCTACAGCTTCCGGGACCTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATAAAGAGATTAGCATATGAAGGGGCAGCAGCTACTGCGGATAACAATCCTCAAAGAAACCCTGCAGTAGCATCAAAGAGCATAAGCAATGGAGCAATTGCTAGCAGTTCCATGTCATCTACTGCCTCATCGGAAGTGACGGAATATGAATACTCCAGTCCTTCAAAACAAGAAGTCATATATATATATATATATATATATATATATATATCATCTGTTGTACTTTCTTGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

102

Amino Acids

11.17

Weight (kDa)

8.71

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AciI	CCGC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	237
AluBI	AGCT	3 cut(s)	12, 18, 104
AluI	AGCT	3 cut(s)	12, 18, 104
AlwNI	CAGNNNCTG	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	98, 101
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	110, 113
BcnI	CCSGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	2 cut(s)	13, 135
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	26, 54
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	152
BmtI	GCTAGC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	110, 113
BshNI	GGYRCC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	26, 54
BspMAI	CTGCAG	1 cut(s)	139
BspOI	GCTAGC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	2 cut(s)	13, 135
BstV1I	GCAGC	2 cut(s)	110, 113
BstXI	CCANNNNNNTGG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	64, 70, 184
CviJI	RGCY	3 cut(s)	12, 18, 104
CviKI_1	RGCY	3 cut(s)	12, 18, 104
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	25
FaeI	CATG	3 cut(s)	67, 73, 187
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	3 cut(s)	63, 69, 183
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	99, 102
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	2 cut(s)	99, 102
GsuI	CTGGAG	1 cut(s)	211
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	3 cut(s)	67, 73, 187
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	3 cut(s)	38, 86, 243
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	67, 73, 187
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	3 cut(s)	35, 147, 241
Lsp1109I	GCAGC	2 cut(s)	110, 113
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	208
MfeI	CAATTG	1 cut(s)	168
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	2 cut(s)	132, 208
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	67, 73, 187
NlaIV	GGNNCC	2 cut(s)	26, 54
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	100, 103
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	26, 54
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	2 cut(s)	99, 102
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	4 cut(s)	14, 20, 30, 106
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	2 cut(s)	13, 135
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	21
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	98, 101
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	17, 80, 105, 234
TspGWI	ACGGA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.