Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Forward (+)

64160300 .. 64162469

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG432100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTGCAATTCGGTTGGATGATGGTGATGCTGATAATATTGAGAAAACTTTATCTCTTGCCTTGGTGGATGGCAGAAATGCTGCTCCCAAAGATAAGAGTATCACAACGGTTGACCCATTGGCCTCTAGCACTTGGCAAGAGGTTTCATCATCAAAGACATTGATCACACCTGTACAGTGCAAATCTTTGTGGAAGCAATTCAAGTCAGAGACTGAGTACAGTGTTTCTCAGGCTATTGCTGCCCAGCTTCCGGGACTTCTCTCTTTGTCCACCAAGTTGGTGCCAACTATCATGAACATGATGAAGAGATTAGCAGATGAAGGGGCAGCAGCTGCTTCAGATAACAATCCTCAAAGAAACCCTGCAGTAGCATCAAAAGGCATAAGCAATGGAGCAAATGCTAGCAGTTCCATGTCAACTTCTGCTTCGTCAGGAGTGACAGAATCTGAATACTCTAGTCCTTCAAAACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

159

Amino Acids

16.65

Weight (kDa)

5.21

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sey1_3HB	PF20428	1 - 79	2.7e-17	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	177, 221
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	205, 468
AluBI	AGCT	2 cut(s)	250, 335
AluI	AGCT	2 cut(s)	250, 335
Alw26I	GTCTC	1 cut(s)	206
AlwNI	CAGNNNCTG	3 cut(s)	215, 335, 449
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	6 cut(s)	5, 83, 242, 329, 332, 335
Asp700I	GAANNNNTTC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	70, 229, 322, 341, 344
BccI	CCATC	2 cut(s)	17, 65
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	129, 405, 459
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	6 cut(s)	6, 84, 243, 330, 333, 336
BlsI	GCNGC	6 cut(s)	7, 85, 244, 331, 334, 337
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	19, 383
BmtI	GCTAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	25, 76
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	207, 245
BseXI	GCAGC	5 cut(s)	70, 229, 322, 341, 344
BseYI	CCCAGC	1 cut(s)	246
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	208, 244
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	370
BspOI	GCTAGC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	397
BsrGI	TGTACA	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	112, 180, 224
Bst6I	CTCTTC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	216, 231
BstF5I	GGATG	2 cut(s)	25, 76
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 335
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	70, 229, 322, 341, 344
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	25, 76
BtsIMutI	CAGTG	2 cut(s)	185, 229
Cac8I	GCNNGC	1 cut(s)	406
CaiI	CAGNNNCTG	3 cut(s)	215, 335, 449
CciI	TCATGA	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	176, 220
CviAII	CATG	3 cut(s)	295, 301, 415
CviJI	RGCY	5 cut(s)	5, 125, 236, 250, 335
CviKI_1	RGCY	5 cut(s)	5, 125, 236, 250, 335
CviQI	GTAC	2 cut(s)	176, 220
DdeI	CTNAG	2 cut(s)	216, 231
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	298, 304, 418
FaiI	YATR	4 cut(s)	296, 302, 386, 416
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	3 cut(s)	294, 300, 414
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	6 cut(s)	6, 84, 243, 330, 333, 336
FokI	GGATG	2 cut(s)	32, 83
Fsp4HI	GCNGC	6 cut(s)	6, 84, 243, 330, 333, 336
FspBI	CTAG	3 cut(s)	129, 405, 459
GluI	GCNGC	6 cut(s)	6, 84, 243, 330, 333, 336
GsaI	CCCAGC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	3 cut(s)	298, 304, 418
HincII	GTYRAC	2 cut(s)	115, 420
HindII	GTYRAC	2 cut(s)	115, 420
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	115, 273, 420
Hpy188I	TCNGA	3 cut(s)	211, 343, 451
Hpy188III	TCNNGA	2 cut(s)	295, 435
Hpy8I	GTNNAC	3 cut(s)	115, 273, 420
HpyAV	CCTTC	2 cut(s)	317, 474
HpyCH4III	ACNGT	3 cut(s)	112, 180, 224
HpyCH4V	TGCA	3 cut(s)	8, 183, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 335
HpyF3I	CTNAG	2 cut(s)	216, 231
Hsp92II	CATG	3 cut(s)	298, 304, 418
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	91, 395
LpnPI	CCDG	6 cut(s)	186, 218, 260, 267, 378, 420
Lsp1109I	GCAGC	5 cut(s)	70, 229, 322, 341, 344
LweI	GCATC	2 cut(s)	19, 383
MaeI	CTAG	3 cut(s)	129, 405, 459
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	319
MluCI	AATT	2 cut(s)	9, 200
MnlI	CCTC	3 cut(s)	136, 136, 363
MroXI	GAANNNNTTC	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	242, 335
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	165
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	3 cut(s)	298, 304, 418
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	439
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	7, 85, 244, 331, 334, 337
PspFI	CCCAGC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	3 cut(s)	215, 335, 449
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	177, 221
RsaNI	GTAC	2 cut(s)	176, 220
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	6 cut(s)	6, 84, 243, 330, 333, 336
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	4 cut(s)	147, 175, 252, 337
SfaNI	GCATC	2 cut(s)	19, 383
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	9, 200
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	3 cut(s)	129, 405, 459
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	112, 180, 224
TasI	AATT	2 cut(s)	9, 200
TatI	WGTACW	2 cut(s)	175, 219
TfiI	GAWTC	1 cut(s)	446
TscAI	CASTG	2 cut(s)	185, 229
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	6 cut(s)	5, 83, 242, 329, 332, 335
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	138, 311, 320, 336
TspRI	CASTG	2 cut(s)	185, 229
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	3 cut(s)	129, 405, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.