Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001198

Physical Location & Seq

Genomic Coordinates Reverse (-)

31841242 .. 31852030

Gene Structure 10789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATCTACACCCAGTATTCTCTAAAAGATTATGACTGTCTTCCATCATCTACTGAGTCAGCTCTCTCCTTTATGGATACATTTGTGAGGTTTCGAGCTTTCTTCACAGATTTAGGTTTTTTTCCTTTCATATTGTGGTTTTCTGTTTTTGGATTAACGTCGGGGAAAGATGCAAGGGGCTTTTGGCTTAGAAGACCACAGCAGCTAACAAACATAAGGACAAGGATATTTAGAAAGACTTTTCTTCTTGTCCACATAATCAGGTGGTTTGGAGGCTCCTTTGTGCCGAGTTTTGTGACTTCTCTACTTCTCCTTTGGTTGTTTGCTAATGTGTATCCAGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCAGGAGATGTAGTACCCATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

133

Amino Acids

15.54

Weight (kDa)

9.72

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001198)

Species	Orthologous Gene IDs
malus_domestica	MD01G1215400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0159861 RchiOBHm_Chr3g0459421 RchiOBHm_Chr3g0487861 RchiOBHm_Chr3g0492051 RchiOBHm_Chr5g0035771 RchiOBHm_Chr6g0246661 RchiOBHm_Chr7g0202831
rosa_laevigata	RLG00000001369 RLG00000011478 RLG00000020137 RLG00000020475 RLG00000032827 RLG00000034363 RLG00000035497
rosa_multiflora	Rmu_co7998598.1_g000001 Rmu_sc0001163.1_g000040 Rmu_sc0002839.1_g000004 Rmu_sc0002942.1_g000020 Rmu_sc0028697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225820 Rroxscaffold_5G00370220 Rroxscaffold_7G00168140
rosa_rugosa	Rorug01G0101200 Rorug02G0305900
rosa_samantha	Rh1AG016700 Rh1BG026700 Rh1BG034000 Rh1BG041100 Rh1DG451700 Rh2AG266600 Rh2AG315500 Rh2AG432100 Rh2AG442100 Rh2BG273300 Rh2BG470100 Rh2CG429400 Rh3BG376000 Rh3CG334900 Rh3DG337000 Rh4CG134700 Rh4CG188500 Rh5AG186100 Rh5DG184600 Rh5DG184700 Rh6AG270600 Rh7AG267600 Rh7AG285300 Rh7CG286400 Rh7CG304400 Rh7CG304500 Rh7CG509000 Rh7DG208100 Rh7DG248900 Rh7DG476600
rosa_wichuraiana	Rw1G012800 Rw6G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	4 cut(s)	62, 98, 205, 369
AluI	AGCT	4 cut(s)	62, 98, 205, 369
ApeKI	GCWGC	1 cut(s)	202
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BbsI	GAAGAC	2 cut(s)	32, 199
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	2 cut(s)	70, 345
BfuI	GTATCC	2 cut(s)	70, 345
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	7
BpiI	GAAGAC	2 cut(s)	32, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse1I	ACTGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	3
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	356, 367
BstDEI	CTNAG	2 cut(s)	54, 188
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	32, 199
BsuI	GTATCC	2 cut(s)	70, 345
Cac8I	GCNNGC	2 cut(s)	356, 367
Csp6I	GTAC	1 cut(s)	389
CviJI	RGCY	8 cut(s)	62, 98, 180, 187, 205, 276, 354, 369
CviKI_1	RGCY	8 cut(s)	62, 98, 180, 187, 205, 276, 354, 369
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	54, 188
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	376
FaiI	YATR	5 cut(s)	33, 74, 131, 215, 257
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	173, 365
HpyF3I	CTNAG	2 cut(s)	54, 188
HpySE526I	ACGT	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	6 cut(s)	26, 247, 351, 363, 368, 390
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	32, 94, 204, 236
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	81, 266
MseI	TTAA	2 cut(s)	155, 371
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	155, 371
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	8 cut(s)	64, 92, 100, 118, 161, 207, 266, 371
SfaNI	GCATC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	155, 371
Tru9I	TTAA	2 cut(s)	155, 371
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.