RLG00000020137

domain in TBC and LysM domain containing proteins

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
61516417 .. 61517691
1275 bp
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UTR
Exon/CDS
Intron
RLM00000020137

Sequence Viewer

Length: 477 bp
ATGTTTCCTAAGAAATATGTTTTTGGTAGTGAAAAAAGAAAAAAACAGCAAGAAGATTTTATAAGCTCCCAAAGAGGTTCTTTAGATAAGTTTTTTAACAAAAGATGTGTTTCTTCAGAAAATCAAGGTGAAAATGAGGTAACCCAAGGAGTTCAAGATATAGGTGAGAACGAAAATGAGTTACGAACTAACCATCCTGAAAAGGTCGGCAACGCTCAGTCACTTCCTCACAAAGATCCTGGCTTTGCTTCCTCCTCTAGAGCTTTCACTCATACTGAGCTTGAAGATCTCAAATCTCTACTTGCGTCCTTGGCTGCTCAGTCACACAGCGACGGGCAATTCATCTCTCCCTCGGTTTTTCAGGTTTTGGGTGTCAACTATTTGATTCGAAAGTTTGGTTTTTCTGAGGAATTTTTAGCGTGCCTCCTTTGTCACCGTTATCTCCTCACCCCTGTTTCGGATACAACCAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.78

Weight (kDa)

6.2

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 2 cut(s) 155, 284
AjnI CCWGG 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 4 cut(s) 66, 263, 280, 471
AluI AGCT 4 cut(s) 66, 263, 280, 471
AlwI GGATC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 410
AsuHPI GGTGA 4 cut(s) 140, 176, 425, 439
AsuII TTCGAA 1 cut(s) 388
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 240
BciVI GTATCC 1 cut(s) 454
BfaI CTAG 1 cut(s) 258
BfuI GTATCC 1 cut(s) 454
BglII AGATCT 1 cut(s) 286
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 388
BsaJI CCNNGG 3 cut(s) 145, 309, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 145, 309, 351
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMII CTCAG 4 cut(s) 230, 267, 332, 396
BseRI GAGGAG 2 cut(s) 244, 434
BseXI GCAGC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 457
Bsp119I TTCGAA 1 cut(s) 388
Bsp143I GATC 2 cut(s) 235, 286
BspCNI CTCAG 4 cut(s) 229, 268, 331, 397
BspPI GGATC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 388
BssECI CCNNGG 3 cut(s) 145, 309, 351
BssMI GATC 2 cut(s) 235, 286
BssT1I CCWWGG 2 cut(s) 145, 309
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 5 cut(s) 9, 216, 276, 318, 405
BstEII GGTNACC 1 cut(s) 139
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 238, 289
BstMBI GATC 2 cut(s) 235, 286
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 2 cut(s) 235, 286
BstYI RGATCY 2 cut(s) 235, 286
BsuI GTATCC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 421
CseI GACGC 1 cut(s) 294
CviJI RGCY 6 cut(s) 66, 243, 263, 280, 314, 471
CviKI_1 RGCY 6 cut(s) 66, 243, 263, 280, 314, 471
DdeI CTNAG 5 cut(s) 9, 216, 276, 318, 405
DpnI GATC 2 cut(s) 237, 288
DpnII GATC 2 cut(s) 235, 286
Eco130I CCWWGG 2 cut(s) 145, 309
Eco57I CTGAAG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 145, 309
ErhI CCWWGG 2 cut(s) 145, 309
FaiI YATR 4 cut(s) 18, 62, 161, 273
FalI AAGNNNNNCTT 2 cut(s) 64, 96
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 315
HgaI GACGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 1 cut(s) 385
HphI GGTGA 4 cut(s) 140, 176, 425, 439
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 118, 406, 460
Hpy188III TCNNGA 3 cut(s) 155, 197, 258
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 5 cut(s) 9, 216, 276, 318, 405
Kzo9I GATC 2 cut(s) 235, 286
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 5 cut(s) 210, 225, 252, 347, 465
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 5 cut(s) 139, 180, 219, 321, 431
MalI GATC 2 cut(s) 237, 288
MboI GATC 2 cut(s) 235, 286
MboII GAAGA 3 cut(s) 65, 105, 296
MflI RGATCY 2 cut(s) 235, 286
MluCI AATT 2 cut(s) 338, 410
MnlI CCTC 9 cut(s) 68, 130, 237, 262, 265, 361, 400, 434, 455
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 235, 286
NmuCI GTSAC 3 cut(s) 219, 321, 431
NspV TTCGAA 1 cut(s) 388
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 316
PsiI TTATAA 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 238
PspEI GGTNACC 1 cut(s) 139
PspGI CCWGG 1 cut(s) 238
PsuI RGATCY 2 cut(s) 235, 286
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 235, 286
ScrFI CCNGG 1 cut(s) 240
SfuI TTCGAA 1 cut(s) 388
Sse9I AATT 2 cut(s) 338, 410
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 145, 309
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 1 cut(s) 388
TasI AATT 2 cut(s) 338, 410
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 3 cut(s) 219, 321, 431
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 3 cut(s) 219, 321, 431
TspDTI ATGAA 1 cut(s) 331
XapI RAATTY 1 cut(s) 410
XbaI TCTAGA 1 cut(s) 257
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.