Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0001465

Physical Location & Seq

Genomic Coordinates Forward (+)

86954 .. 89353

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgaggaagcggggactaaaactcaaaattttcacacttagaacaaaaattgcgcccgaccccaaaactgaaacacaaaccctaagctctgttctcaacccagactcgagctcctcttcctcctcctcatcatcacaatcctccctcctccattctcaggcggaatctgaagcgccgagatcccgacctagatctaaaattgaagtaacagctctgaatccagagcccggcctcgatctgaagaaattaaagaggaatggttctttcctctcaagccccaccgaagtcgggattacggatcaagatgaaggagctctcaagcatcttacagacattaaatggtccaggatacagaaagggtttagacttgaattctattttcacactaaccctttctttgaaaaccctgtcttgaccaagacgtatcacatgaatgatgaagatgaattctttctagaatctgcaatagggacagagattgcatggcatccagaaaaatgcttgacacagaagctcaataagatatttgggaagggatcaaagaaagctaagccaatgactaataaaagcttctttggctttttcagtccacctgaaatcccaaagaacctaaaagatatgaaagatactattgaggtgaggttgatcattcgagatgagatcatcccacgtgctgtttcatggtttatgggggaggctggactggaggagaatacccaaatatctgcacagcactccaatttcctcaagaatctatcaaaaaaatgtcagggagtgtgttggaagtctaagattgatccaggtactattctcccttactctgaaactagaaattgtgccagcgctttgccgcagaacatactcttatcaatgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

292

Amino Acids

32.92

Weight (kDa)

9.3

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	98 - 232	4.8e-38	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001465)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32980 FvH4_2g32990 FvH4_2g33010 FvH4_2g33010 FvH4_3g06070 FvH4_3g06070 FvH4_3g08121 FvH4_4g31040 FvH4_5g10050 FvH4_5g10050 FvH4_5g10060 FvH4_7g30720
rosa_chinensis	RchiOBHm_Chr5g0010081 RchiOBHm_Chr5g0010091 RchiOBHm_Chr5g0084011
rosa_laevigata	RLG00000004717 RLG00000010542 RLG00000011121 RLG00000026384 RLG00000026388 RLG00000031724
rosa_multiflora	Rmu_sc0000898.1_g000020 Rmu_sc0001192.1_g000048 Rmu_sc0003764.1_g000005 Rmu_ssc0000114.1_g000036
rosa_roxburghii	Rroxscaffold_3G00249040 Rroxscaffold_3G00266610 Rroxscaffold_4G00280020
rosa_rugosa	Rorug02G0380100 Rorug04G0449100 Rorug04G0449100 Rorug06G0489300
rosa_samantha	Rh1AG436800 Rh1CG406400 Rh2AG329500 Rh4AG189100 Rh4BG345900 Rh5AG280500 Rh5AG529400 Rh5CG087600 Rh5DG185000 Rh5DG374500 Rh6BG152500 Rh6BG169300 Rh6CG501800 Rh6DG136700 Rh6DG225600 Rh6DG488100 Rh7CG095300 Rh7DG400300
rosa_wichuraiana	Rw2G017690 Rw4G016130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	10, 161, 851
AclWI	GGATC	4 cut(s)	174, 306, 544, 791
AcsI	RAATTY	3 cut(s)	27, 371, 446
AcuI	CTGAAG	2 cut(s)	189, 260
AcvI	CACGTG	1 cut(s)	671
AfaI	GTAC	1 cut(s)	805
AfeI	AGCGCT	1 cut(s)	844
AfiI	CCNNNNNNNGG	3 cut(s)	157, 227, 288
AgsI	TTSAA	3 cut(s)	203, 371, 401
AjnI	CCWGG	2 cut(s)	344, 799
AluBI	AGCT	7 cut(s)	87, 111, 212, 314, 514, 548, 570
AluI	AGCT	7 cut(s)	87, 111, 212, 314, 514, 548, 570
Alw21I	GWGCWC	2 cut(s)	113, 316
AlwI	GGATC	4 cut(s)	174, 306, 544, 791
Ama87I	CYCGRG	1 cut(s)	106
Aor51HI	AGCGCT	1 cut(s)	844
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	27, 371, 446
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	55, 175, 845
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	342
BanII	GRGCYC	3 cut(s)	113, 228, 316
BbrPI	CACGTG	1 cut(s)	671
Bbv12I	GWGCWC	2 cut(s)	113, 316
BciT130I	CCWGG	2 cut(s)	346, 801
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	3 cut(s)	189, 455, 828
BfoI	RGCGCY	2 cut(s)	176, 846
BfuI	GTATCC	1 cut(s)	342
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	1 cut(s)	851
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	852
Bme1390I	CCNGG	3 cut(s)	228, 346, 801
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	342
BmrFI	CCNGG	3 cut(s)	228, 346, 801
BmsI	GCATC	2 cut(s)	331, 496
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	3 cut(s)	256, 302, 731
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	671
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 227, 288
Bse1I	ACTGG	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	346, 801
BseGI	GGATG	2 cut(s)	487, 663
BseLI	CCNNNNNNNGG	3 cut(s)	157, 227, 288
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	708
BseRI	GAGGAG	5 cut(s)	103, 112, 115, 137, 722
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	113, 316
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	27, 484
BslI	CCNNNNNNNGG	3 cut(s)	157, 227, 288
BsmFI	GGGAC	2 cut(s)	27, 484
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	113, 228, 316
Bsp143I	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
Bsp1720I	GCTNAGC	1 cut(s)	549
BspACI	CCGC	3 cut(s)	10, 161, 851
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	4 cut(s)	174, 306, 544, 791
BsrI	ACTGG	1 cut(s)	708
BssMI	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
Bst2UI	CCWGG	2 cut(s)	346, 801
Bst6I	CTCTTC	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	841
BstDEI	CTNAG	5 cut(s)	38, 83, 156, 549, 789
BstF5I	GGATG	2 cut(s)	487, 663
BstH2I	RGCGCY	2 cut(s)	176, 846
BstHHI	GCGC	3 cut(s)	55, 175, 845
BstKTI	GATC	8 cut(s)	182, 194, 238, 301, 539, 648, 663, 799
BstMBI	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	576
BstNI	CCWGG	2 cut(s)	346, 801
BstSCI	CCNGG	3 cut(s)	226, 344, 799
BstX2I	RGATCY	2 cut(s)	179, 191
BstYI	RGATCY	2 cut(s)	179, 191
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	487, 663
Cac8I	GCNNGC	1 cut(s)	841
CfoI	GCGC	3 cut(s)	55, 175, 845
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	804
CviAII	CATG	3 cut(s)	430, 483, 681
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	5 cut(s)	38, 83, 156, 549, 789
DpnI	GATC	8 cut(s)	181, 193, 237, 300, 538, 647, 662, 798
DpnII	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	2 cut(s)	111, 314
Eco24I	GRGCYC	3 cut(s)	113, 228, 316
Eco47I	GGWCC	1 cut(s)	342
Eco47III	AGCGCT	1 cut(s)	844
Eco53kI	GAGCTC	2 cut(s)	111, 314
Eco57I	CTGAAG	2 cut(s)	189, 260
Eco72I	CACGTG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	106
EcoICRI	GAGCTC	2 cut(s)	111, 314
EcoRI	GAATTC	2 cut(s)	371, 446
EcoRII	CCWGG	2 cut(s)	344, 799
EcoT38I	GRGCYC	3 cut(s)	113, 228, 316
FaeI	CATG	3 cut(s)	433, 486, 684
FaiI	YATR	6 cut(s)	431, 484, 620, 682, 689, 860
FaqI	GGGAC	2 cut(s)	27, 484
FatI	CATG	3 cut(s)	429, 482, 680
FauI	CCCGC	1 cut(s)	3
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	1 cut(s)	851
FokI	GGATG	2 cut(s)	474, 650
FriOI	GRGCYC	3 cut(s)	113, 228, 316
Fsp4HI	GCNGC	1 cut(s)	851
FspBI	CTAG	3 cut(s)	189, 455, 828
GlaI	GCGC	3 cut(s)	54, 174, 844
GluI	GCNGC	1 cut(s)	851
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	2 cut(s)	176, 846
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	3 cut(s)	55, 175, 845
Hin1II	CATG	3 cut(s)	433, 486, 684
Hin6I	GCGC	3 cut(s)	53, 173, 843
HinP1I	GCGC	3 cut(s)	53, 173, 843
HindIII	AAGCTT	1 cut(s)	568
HinfI	GANTC	5 cut(s)	104, 164, 217, 458, 751
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	4 cut(s)	169, 216, 240, 823
Hpy188III	TCNNGA	9 cut(s)	183, 221, 289, 302, 412, 455, 491, 653, 748
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	302, 526
HpyCH4IV	ACGT	2 cut(s)	422, 670
HpyCH4V	TGCA	3 cut(s)	464, 482, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	576
HpyF3I	CTNAG	5 cut(s)	38, 83, 156, 549, 789
HpySE526I	ACGT	2 cut(s)	422, 670
Hsp92II	CATG	3 cut(s)	433, 486, 684
HspAI	GCGC	3 cut(s)	53, 173, 843
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
LmnI	GCTCC	2 cut(s)	116, 311
LweI	GCATC	2 cut(s)	331, 496
MaeI	CTAG	3 cut(s)	189, 455, 828
MaeII	ACGT	2 cut(s)	422, 670
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	8 cut(s)	181, 193, 237, 300, 538, 647, 662, 798
MboI	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
MboII	GAAGA	3 cut(s)	108, 253, 452
MflI	RGATCY	2 cut(s)	179, 191
MhlI	GDGCHC	3 cut(s)	113, 228, 316
MluCI	AATT	9 cut(s)	27, 48, 198, 245, 371, 446, 739, 832, 874
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	761
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	2 cut(s)	248, 336
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	3 cut(s)	228, 346, 801
MvaI	CCWGG	2 cut(s)	346, 801
MwoI	GCNNNNNNNGC	1 cut(s)	576
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
NlaIII	CATG	3 cut(s)	433, 486, 684
NmeAIII	GCCGAG	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	4 cut(s)	164, 217, 458, 751
PfoI	TCCNGGA	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	852
PleI	GAGTC	1 cut(s)	98
PmaCI	CACGTG	1 cut(s)	671
PmlI	CACGTG	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	671
Psp124BI	GAGCTC	2 cut(s)	113, 316
Psp6I	CCWGG	2 cut(s)	344, 799
PspCI	CACGTG	1 cut(s)	671
PspGI	CCWGG	2 cut(s)	344, 799
PspPI	GGNCC	1 cut(s)	342
PspXI	VCTCGAGB	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	179, 191
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	2 cut(s)	113, 316
SaqAI	TTAA	2 cut(s)	248, 336
SatI	GCNGC	1 cut(s)	851
Sau3AI	GATC	8 cut(s)	179, 191, 235, 298, 536, 645, 660, 796
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	228, 346, 801
SduI	GDGCHC	3 cut(s)	113, 228, 316
SfaNI	GCATC	2 cut(s)	331, 496
Sfr274I	CTCGAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	4 cut(s)	106, 271, 317, 746
SmoI	CTYRAG	4 cut(s)	106, 271, 317, 746
Sse9I	AATT	9 cut(s)	27, 48, 198, 245, 371, 446, 739, 832, 874
SsiI	CCGC	3 cut(s)	10, 161, 851
SspMI	CTAG	3 cut(s)	189, 455, 828
SstI	GAGCTC	2 cut(s)	113, 316
StyD4I	CCNGG	3 cut(s)	226, 344, 799
TaiI	ACGT	2 cut(s)	425, 673
TaqI	TCGA	3 cut(s)	107, 234, 652
TasI	AATT	9 cut(s)	27, 48, 198, 245, 371, 446, 739, 832, 874
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	164, 217, 458, 751
Tru1I	TTAA	2 cut(s)	248, 336
Tru9I	TTAA	2 cut(s)	248, 336
TspDTI	ATGAA	6 cut(s)	321, 446, 453, 459, 635, 669
TspGWI	ACGGA	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	3 cut(s)	27, 371, 446
XbaI	TCTAGA	1 cut(s)	454
XhoI	CTCGAG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	3 cut(s)	189, 455, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.