Rmu_ssc0000114.1_g000036

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000114.1
OG0001465
Physical Location & Seq
Reverse (-)
206579 .. 209023
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
atgttggtctggcccagattggagctattttccctctcaactgatttccctctcaactcaaaccctagcccctcctcctcttgtctcacagctcgcctgaggctactgaatgggatcatggctgacgttacgaccttctcgtgtgatcgttgcagcaaacccgtcaatcttcagtgtcccaagtgtgtggaattgaagcttcctcgtgaagatgccgctttctggacagagattgcatggcatccagaaaaatgcttgacacagaagctcaataagatatctgggaagggatcaaagaaagctaagccaatgactaataaaagcttctttggctttttcagtccacctgaaatcccaaagaacctgaaagatatgaaagatactgttgaggtcataaatctgaaagacgagatggaaagggattgtttctttgggttgaccattcgagatgagatcatcccacgtgccgtttcatggttgatgggggaggctggactggaggagaatacccaaatatctgcacagcactccaatttcctcaagaatctatcaaaaaaatgtcaaggagtgtgttggaagtctaagaattatccaggaggagtgcaagctatgcttctacaggtactcccattgtgcttgtgtctgttttgcataaaaacaacagaatatgaaattggtgtagggctaaacacagaatatagaattactgatttagttcggcatacatctagtttccaatctacagaatgtagttaccttagtgatatcaggctcttgatgttaggtcaggccgtcaatcaggatcaatgtttggatgacgttaaagaagaatatgaagggaactgttataggaggagtgcaagctatgcttctacaggtactcccattgtgcttgtgtctgttttgcataaaaacaacagaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

308

Amino Acids

34.79

Weight (kDa)

8.11

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 76 - 163 1e-15 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AclWI GGATC 3 cut(s) 122, 298, 810
AcuI CTGAAG 1 cut(s) 155
AcvI CACGTG 1 cut(s) 464
AfaI GTAC 2 cut(s) 624, 880
AfiI CCNNNNNNNGG 2 cut(s) 222, 474
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 592
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 8 cut(s) 25, 92, 199, 268, 302, 324, 608, 864
AluI AGCT 8 cut(s) 25, 92, 199, 268, 302, 324, 608, 864
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 122, 298, 810
AoxI GGCC 2 cut(s) 11, 789
ApeKI GCWGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 12
AxyI CCTNAGG 1 cut(s) 98
BauI CACGAG 2 cut(s) 139, 204
BbrPI CACGTG 1 cut(s) 464
BbvI GCAGC 1 cut(s) 165
BccI CCATC 2 cut(s) 406, 475
BceAI ACGGC 2 cut(s) 452, 776
BciT130I CCWGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 66, 729
BfmI CTRYAG 3 cut(s) 617, 741, 873
BisI GCNGC 2 cut(s) 154, 216
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 2 cut(s) 155, 217
Bme1390I CCNGG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 2 cut(s) 202, 250
BpmI CTGGAG 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 524
BsaAI YACGTR 1 cut(s) 464
BsaXI ACNNNNNCTCC 4 cut(s) 609, 639, 865, 895
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 474
Bse1I ACTGG 1 cut(s) 501
Bse21I CCTNAGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 594
BseGI GGATG 3 cut(s) 241, 456, 820
BseLI CCNNNNNNNGG 2 cut(s) 222, 474
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 5 cut(s) 64, 67, 515, 612, 868
BseXI GCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 2 cut(s) 13, 791
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 222, 474
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 2 cut(s) 13, 791
Bsp143I GATC 5 cut(s) 114, 145, 290, 453, 802
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 1 cut(s) 216
BspANI GGCC 2 cut(s) 13, 791
BspCNI CTCAG 1 cut(s) 90
BspPI GGATC 3 cut(s) 122, 298, 810
BsrI ACTGG 1 cut(s) 501
BssMI GATC 5 cut(s) 114, 145, 290, 453, 802
BssSI CACGAG 2 cut(s) 139, 204
Bst2BI CACGAG 2 cut(s) 139, 204
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 385, 845
BstAPI GCANNNNNTGC 2 cut(s) 610, 866
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 94, 606, 862
BstDEI CTNAG 4 cut(s) 98, 303, 582, 758
BstF5I GGATG 3 cut(s) 241, 456, 820
BstKTI GATC 5 cut(s) 117, 148, 293, 456, 805
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 5 cut(s) 114, 145, 290, 453, 802
BstMWI GCNNNNNNNGC 3 cut(s) 330, 610, 866
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 3 cut(s) 617, 741, 873
BstV1I GCAGC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 98
BsuRI GGCC 2 cut(s) 13, 791
BtsCI GGATG 3 cut(s) 241, 456, 820
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 3 cut(s) 94, 606, 862
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 623, 879
CviAII CATG 3 cut(s) 118, 237, 474
CviQI GTAC 2 cut(s) 623, 879
DdeI CTNAG 4 cut(s) 98, 303, 582, 758
DpnI GATC 5 cut(s) 116, 147, 292, 455, 804
DpnII GATC 5 cut(s) 114, 145, 290, 453, 802
Eco32I GATATC 2 cut(s) 279, 766
Eco57I CTGAAG 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 592
EcoRV GATATC 2 cut(s) 279, 766
FaeI CATG 3 cut(s) 121, 240, 477
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 853, 885
FaqI GGGAC 1 cut(s) 162
FatI CATG 3 cut(s) 117, 236, 473
Fnu4HI GCNGC 2 cut(s) 154, 216
FokI GGATG 3 cut(s) 228, 443, 827
Fsp4HI GCNGC 2 cut(s) 154, 216
FspBI CTAG 2 cut(s) 66, 729
GluI GCNGC 2 cut(s) 154, 216
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 2 cut(s) 13, 791
Hin1II CATG 3 cut(s) 121, 240, 477
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 2 cut(s) 197, 322
HinfI GANTC 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 344, 438
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 7 cut(s) 206, 223, 245, 446, 541, 775, 800
Hpy8I GTNNAC 2 cut(s) 344, 438
HpyAV CCTTC 3 cut(s) 145, 280, 830
HpyCH4III ACNGT 2 cut(s) 385, 845
HpyCH4IV ACGT 3 cut(s) 126, 463, 819
HpyCH4V TGCA 7 cut(s) 153, 236, 521, 604, 651, 860, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 610, 866
HpyF3I CTNAG 4 cut(s) 98, 303, 582, 758
HpySE526I ACGT 3 cut(s) 126, 463, 819
Hsp92II CATG 3 cut(s) 121, 240, 477
Kzo9I GATC 5 cut(s) 114, 145, 290, 453, 802
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 2 cut(s) 202, 250
MaeI CTAG 2 cut(s) 66, 729
MaeII ACGT 3 cut(s) 126, 463, 819
MaeIII GTNAC 2 cut(s) 127, 752
MalI GATC 5 cut(s) 116, 147, 292, 455, 804
MboI GATC 5 cut(s) 114, 145, 290, 453, 802
MboII GAAGA 3 cut(s) 161, 221, 839
MluCI AATT 5 cut(s) 191, 532, 586, 672, 702
MmeI TCCRAC 1 cut(s) 554
MseI TTAA 1 cut(s) 822
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 3 cut(s) 330, 610, 866
NdeII GATC 5 cut(s) 114, 145, 290, 453, 802
NlaIII CATG 3 cut(s) 121, 240, 477
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 2 cut(s) 155, 217
PmaCI CACGTG 1 cut(s) 464
PmlI CACGTG 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 592
PspCI CACGTG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 592
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 624, 880
RsaNI GTAC 2 cut(s) 623, 879
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 2 cut(s) 154, 216
Sau3AI GATC 5 cut(s) 114, 145, 290, 453, 802
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 594
SfaNI GCATC 2 cut(s) 202, 250
SfcI CTRYAG 3 cut(s) 617, 741, 873
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 191, 532, 586, 672, 702
SsiI CCGC 1 cut(s) 216
SspMI CTAG 2 cut(s) 66, 729
StyD4I CCNGG 1 cut(s) 592
TaaI ACNGT 2 cut(s) 385, 845
TaiI ACGT 3 cut(s) 129, 466, 822
TaqI TCGA 1 cut(s) 445
TasI AATT 5 cut(s) 191, 532, 586, 672, 702
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 389, 462, 684, 849
TspRI CASTG 1 cut(s) 179
XspI CTAG 2 cut(s) 66, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.