Rmu_ssc0000252.1_g000040

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000252.1
Physical Location & Seq
Forward (+)
242276 .. 243703
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1428 bp
atggcgtggtgtagacggcggtgtattgcgatattaggagattttgcaactagaaaaacagcggcgggggcaacgtcaacgatagcaagcaagtgggagaaggagacgaagaaaactagcatgttttctgaattaatcagaagaaattctgctactttagcaccacttatggtggaggagaaagacaagaatagaaccatgaaagaagaaagatcgaagagtaagtctctctacttatgttttgaggagcagataactcgttttaatgttgctcacgttattcaatctatagaattgagccacgtgttggcagcaccaactgatggtgatcatggatgcgatgaacttaagttaggtgaggttgcttatagattcggaccggacacttatgttccctgcaggatgagcaatagtgtcatcggctccaaaattattttctccggtggcatggtatttaacagagaggaaagcagtactactcctcctcccaagacgactttgagtaaagaagtttgtgtgtttgagacagctccaagaatagatccaaatccgacattgcagccctcccaagtgtttaagactagtagacccgatcccttcctagcagaggtgggtggcgaactatattgtttcggtggcccatgttactctgagtccttcgaggtatttgacaagacacatgagaaatggttgcctctggatgtgcctcctaagagatatccctacagtgtctgtcatgcaattttgggaaacaaaatgttactctgggtaaaaaatcagaccggagtagtcgggtttgacgtcgctcaaccggaaaaaggatggacagagttggactcttgtttgggaagctgcattccctatgttaatggttatgatcaactatttgtcaagttgaagtctcatcgtggtgatggttttctaatgttctcctgtaatttagaacaacctcagactgtcagagtctttcacatttcgcatgaatgtgattctatgaaacctatggaacctctgcagctgccaaaattgcctcataaatttcctgtaccacaacgatgtcagttttttcatctagaagataataaagtcggccttgttttcttccatgaccgtcgtgagtatttttatgaggattatgattatttttctcttggtgatgatgatgacgatgatgatgatgaggatgatgtgaacgaggaagaggaagaggaagaggaagaggaagaggaagaggaggaggaggaggaggaggaggaggatgttagcagggtgagaactcttgtcataatatttgaatacgaaattgcggagaaatccatggacatcaagtacaaattgctcaccattcgctgcctggaatactctacccaccctcctgaagaaggtaggatcaccgattcaacccttattggcgcttatgtgatctaa

Protein Analysis

475

Amino Acids

54.56

Weight (kDa)

4.77

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 804
AccB7I CCANNNNNTGG 2 cut(s) 307, 323
AccI GTMKAC 2 cut(s) 13, 586
AciI CCGC 4 cut(s) 19, 62, 65, 1307
AclWI GGATC 3 cut(s) 536, 587, 1397
AcsI RAATTY 2 cut(s) 145, 1037
AcuI CTGAAG 1 cut(s) 1398
AcvI CACGTG 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 801
AfaI GTAC 3 cut(s) 475, 1047, 1331
AfiI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 818, 1382
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 284, 898, 1295, 1401
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 1 cut(s) 1353
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 3 cut(s) 530, 852, 1018
AluI AGCT 3 cut(s) 530, 852, 1018
Alw26I GTCTC 4 cut(s) 98, 231, 518, 906
AlwI GGATC 3 cut(s) 536, 587, 1397
AlwNI CAGNNNCTG 1 cut(s) 732
AoxI GGCC 2 cut(s) 637, 1090
ApeKI GCWGC 6 cut(s) 311, 559, 852, 1015, 1018, 1350
ApoI RAATTY 2 cut(s) 145, 1037
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 1415
AspS9I GGNCC 2 cut(s) 377, 638
AsuHPI GGTGA 7 cut(s) 338, 368, 923, 1166, 1282, 1333, 1384
AvaII GGWCC 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 304
BbvI GCAGC 6 cut(s) 323, 571, 839, 1005, 1027, 1337
BccI CCATC 3 cut(s) 317, 816, 908
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 1355
BclI TGATCA 2 cut(s) 328, 877
BcoDI GTCTC 4 cut(s) 98, 231, 518, 906
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 5 cut(s) 51, 117, 582, 602, 1073
BfmI CTRYAG 4 cut(s) 288, 397, 724, 1013
BfoI RGCGCY 1 cut(s) 1416
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 7 cut(s) 63, 312, 560, 853, 1016, 1019, 1351
BlsI GCNGC 7 cut(s) 64, 313, 561, 854, 1017, 1020, 1352
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 1 cut(s) 1355
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 377, 638
BmiI GGNNCC 2 cut(s) 424, 1008
BmrFI CCNGG 1 cut(s) 1355
BmsI GCATC 1 cut(s) 326
BplI GAGNNNNNCTC 4 cut(s) 211, 243, 821, 853
BsaAI YACGTR 1 cut(s) 304
BsaBI GATNNNNATC 2 cut(s) 327, 546
BsaHI GRCGYC 1 cut(s) 801
BsaJI CCNNGG 1 cut(s) 1317
BsaWI WCCGGW 4 cut(s) 379, 440, 782, 811
BsaXI ACNNNNNCTCC 6 cut(s) 466, 469, 496, 499, 1357, 1387
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 323, 607, 818, 1382
Bse3DI GCAATG 1 cut(s) 554
Bse8I GATNNNNATC 2 cut(s) 327, 546
BseBI CCWGG 1 cut(s) 1355
BseDI CCNNGG 1 cut(s) 1317
BseGI GGATG 6 cut(s) 341, 408, 706, 827, 1189, 1264
BseJI GATNNNNATC 2 cut(s) 327, 546
BseLI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 818, 1382
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 642, 965
BseXI GCAGC 6 cut(s) 323, 571, 839, 1005, 1027, 1337
BshFI GGCC 2 cut(s) 639, 1092
BsiSI CCGG 4 cut(s) 380, 441, 783, 812
BslI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 818, 1382
BsmAI GTCTC 4 cut(s) 98, 231, 518, 906
BsmBI CGTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 2 cut(s) 639, 1092
Bsp143I GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
Bsp19I CCATGG 1 cut(s) 1317
BspACI CCGC 4 cut(s) 19, 62, 65, 1307
BspANI GGCC 2 cut(s) 639, 1092
BspCNI CTCAG 2 cut(s) 643, 964
BspLI GGNNCC 2 cut(s) 424, 1008
BspMAI CTGCAG 2 cut(s) 401, 1017
BspPI GGATC 3 cut(s) 536, 587, 1397
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 1317
BssMI GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
BssNI GRCGYC 1 cut(s) 801
BssT1I CCWWGG 1 cut(s) 1317
Bst2UI CCWGG 1 cut(s) 1355
Bst4CI ACNGT 3 cut(s) 728, 958, 1112
Bst6I CTCTTC 7 cut(s) 212, 1194, 1200, 1206, 1212, 1218, 1224
BstACI GRCGYC 1 cut(s) 801
BstAFI CTTAAG 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 651, 711, 951
BstDSI CCRYGG 1 cut(s) 1317
BstENI CCTNNNNNAGG 2 cut(s) 605, 1380
BstF5I GGATG 6 cut(s) 341, 408, 706, 827, 1189, 1264
BstH2I RGCGCY 1 cut(s) 1416
BstHHI GCGC 1 cut(s) 1415
BstKTI GATC 7 cut(s) 215, 331, 544, 595, 880, 1392, 1425
BstMAI GTCTC 4 cut(s) 98, 231, 518, 906
BstMBI GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
BstMWI GCNNNNNNNGC 4 cut(s) 68, 158, 405, 1027
BstNI CCWGG 1 cut(s) 1355
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 1353
BstSFI CTRYAG 4 cut(s) 288, 397, 724, 1013
BstV1I GCAGC 6 cut(s) 323, 571, 839, 1005, 1027, 1337
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuRI GGCC 2 cut(s) 639, 1092
BtgI CCRYGG 1 cut(s) 1317
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 6 cut(s) 341, 408, 706, 827, 1189, 1264
BtsIMutI CAGTG 1 cut(s) 733
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 732
CfoI GCGC 1 cut(s) 1415
Cfr13I GGNCC 2 cut(s) 377, 638
CpoI CGGWCCG 1 cut(s) 377
Csp6I GTAC 3 cut(s) 474, 1046, 1330
CspI CGGWCCG 1 cut(s) 377
CviJI RGCY 8 cut(s) 300, 423, 530, 562, 639, 852, 1018, 1092
CviKI_1 RGCY 8 cut(s) 300, 423, 530, 562, 639, 852, 1018, 1092
CviQI GTAC 3 cut(s) 474, 1046, 1330
DdeI CTNAG 3 cut(s) 651, 711, 951
DpnI GATC 7 cut(s) 214, 330, 543, 594, 879, 1391, 1424
DpnII GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
Eam1104I CTCTTC 7 cut(s) 212, 1194, 1200, 1206, 1212, 1218, 1224
EarI CTCTTC 7 cut(s) 212, 1194, 1200, 1206, 1212, 1218, 1224
Eco130I CCWWGG 1 cut(s) 1317
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 1398
Eco72I CACGTG 1 cut(s) 304
EcoNI CCTNNNNNAGG 2 cut(s) 605, 1380
EcoRII CCWGG 1 cut(s) 1353
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 1317
ErhI CCWWGG 1 cut(s) 1317
Esp3I CGTCTC 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 1077, 1109
FauI CCCGC 1 cut(s) 58
FbaI TGATCA 2 cut(s) 328, 877
FblI GTMKAC 2 cut(s) 13, 586
Fnu4HI GCNGC 7 cut(s) 63, 312, 560, 853, 1016, 1019, 1351
FokI GGATG 6 cut(s) 348, 415, 713, 834, 1196, 1271
Fsp4HI GCNGC 7 cut(s) 63, 312, 560, 853, 1016, 1019, 1351
FspBI CTAG 5 cut(s) 51, 117, 582, 602, 1073
GlaI GCGC 1 cut(s) 1414
GluI GCNGC 7 cut(s) 63, 312, 560, 853, 1016, 1019, 1351
HaeII RGCGCY 1 cut(s) 1416
HaeIII GGCC 2 cut(s) 639, 1092
HapII CCGG 4 cut(s) 380, 441, 783, 812
HhaI GCGC 1 cut(s) 1415
Hin1I GRCGYC 1 cut(s) 801
Hin6I GCGC 1 cut(s) 1413
HinP1I GCGC 1 cut(s) 1413
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 6 cut(s) 372, 653, 836, 963, 989, 1397
HpaII CCGG 4 cut(s) 380, 441, 783, 812
HphI GGTGA 7 cut(s) 338, 368, 923, 1166, 1282, 1333, 1384
Hpy166II GTNNAC 4 cut(s) 14, 78, 587, 1192
Hpy188I TCNGA 8 cut(s) 130, 140, 377, 552, 652, 780, 954, 962
Hpy188III TCNNGA 4 cut(s) 698, 1073, 1115, 1376
Hpy8I GTNNAC 4 cut(s) 14, 78, 587, 1192
Hpy99I CGWCG 2 cut(s) 806, 1116
HpyAV CCTTC 4 cut(s) 94, 607, 667, 1376
HpyCH4III ACNGT 3 cut(s) 728, 958, 1112
HpyCH4IV ACGT 4 cut(s) 74, 276, 303, 801
HpyCH4V TGCA 6 cut(s) 47, 399, 559, 740, 855, 1015
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 158, 405, 1027
HpyF3I CTNAG 3 cut(s) 651, 711, 951
HpySE526I ACGT 4 cut(s) 74, 276, 303, 801
Hsp92I GRCGYC 1 cut(s) 801
HspAI GCGC 1 cut(s) 1413
Ksp22I TGATCA 2 cut(s) 328, 877
Kzo9I GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
LmnI GCTCC 3 cut(s) 247, 428, 535
Lsp1109I GCAGC 6 cut(s) 323, 571, 839, 1005, 1027, 1337
LweI GCATC 1 cut(s) 326
MaeI CTAG 5 cut(s) 51, 117, 582, 602, 1073
MaeII ACGT 4 cut(s) 74, 276, 303, 801
MaeIII GTNAC 2 cut(s) 644, 759
MalI GATC 7 cut(s) 214, 330, 543, 594, 879, 1391, 1424
MboI GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
MflI RGATCY 1 cut(s) 541
MlyI GAGTC 3 cut(s) 662, 830, 972
MmeI TCCRAC 2 cut(s) 575, 813
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 6 cut(s) 134, 264, 348, 456, 576, 867
MslI CAYNNNNRTG 3 cut(s) 909, 984, 1054
MspA1I CMGCKG 2 cut(s) 62, 1018
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 4 cut(s) 380, 441, 783, 812
MspR9I CCNGG 1 cut(s) 1355
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 1 cut(s) 1355
MwoI GCNNNNNNNGC 4 cut(s) 68, 158, 405, 1027
NcoI CCATGG 1 cut(s) 1317
NdeII GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
NlaIV GGNNCC 2 cut(s) 424, 1008
NspI RCATGY 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PctI GAATGC 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 372, 989, 1397
PflMI CCANNNNNTGG 2 cut(s) 307, 323
PkrI GCNGC 7 cut(s) 64, 313, 561, 854, 1017, 1020, 1352
PleI GAGTC 3 cut(s) 661, 830, 971
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 3 cut(s) 661, 830, 971
Ppu21I YACGTR 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 1353
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 1353
PspN4I GGNNCC 2 cut(s) 424, 1008
PspPI GGNCC 2 cut(s) 377, 638
PstI CTGCAG 2 cut(s) 401, 1017
PstNI CAGNNNCTG 1 cut(s) 732
PsuI RGATCY 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 3 cut(s) 475, 1047, 1331
RsaNI GTAC 3 cut(s) 474, 1046, 1330
RseI CAYNNNNRTG 3 cut(s) 909, 984, 1054
Rsr2I CGGWCCG 1 cut(s) 377
RsrII CGGWCCG 1 cut(s) 377
SaqAI TTAA 6 cut(s) 134, 264, 348, 456, 576, 867
SatI GCNGC 7 cut(s) 63, 312, 560, 853, 1016, 1019, 1351
Sau3AI GATC 7 cut(s) 212, 328, 541, 592, 877, 1389, 1422
Sau96I GGNCC 2 cut(s) 377, 638
SbfI CCTGCAGG 1 cut(s) 401
ScaI AGTACT 1 cut(s) 475
SchI GAGTC 3 cut(s) 662, 830, 972
ScrFI CCNGG 1 cut(s) 1355
SdaI CCTGCAGG 1 cut(s) 401
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 4 cut(s) 288, 397, 724, 1013
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 3 cut(s) 909, 984, 1054
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 581
Sse8387I CCTGCAGG 1 cut(s) 401
SsiI CCGC 4 cut(s) 19, 62, 65, 1307
SspI AATATT 1 cut(s) 1290
SspMI CTAG 5 cut(s) 51, 117, 582, 602, 1073
StyD4I CCNGG 1 cut(s) 1353
StyI CCWWGG 1 cut(s) 1317
TaaI ACNGT 3 cut(s) 728, 958, 1112
TaiI ACGT 4 cut(s) 77, 279, 306, 804
TaqI TCGA 2 cut(s) 215, 660
TatI WGTACW 2 cut(s) 473, 1329
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 372, 989, 1397
Tru1I TTAA 6 cut(s) 134, 264, 348, 456, 576, 867
Tru9I TTAA 6 cut(s) 134, 264, 348, 456, 576, 867
TscAI CASTG 1 cut(s) 733
TseI GCWGC 6 cut(s) 311, 559, 852, 1015, 1018, 1350
TspDTI ATGAA 5 cut(s) 215, 357, 996, 1010, 1058
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 2 cut(s) 307, 323
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 134
XagI CCTNNNNNAGG 2 cut(s) 605, 1380
XapI RAATTY 2 cut(s) 145, 1037
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 1351
XmiI GTMKAC 2 cut(s) 13, 586
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 5 cut(s) 51, 117, 582, 602, 1073
ZraI GACGTC 1 cut(s) 802
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.