DNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 452 - 619 | 3.8e-06 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 455 - 624 | 2.1e-25 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 661 - 768 | 1.2e-19 | Helicase conserved C-terminal domain |
| RecQ_Zn_bind | PF16124 | 779 - 859 | 4.8e-14 | RecQ zinc-binding |
| RQC | PF09382 | 867 - 980 | 4e-19 | RQC domain |
| HRDC | PF00570 | 1024 - 1090 | 1.7e-13 | HRDC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1089 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 948, 2603 |
| AatII | GACGTC | 1 cut(s) | 666 |
| AccB1I | GGYRCC | 1 cut(s) | 317 |
| AccBSI | CCGCTC | 1 cut(s) | 1466 |
| AccI | GTMKAC | 2 cut(s) | 666, 2685 |
| AciI | CCGC | 9 cut(s) | 227, 354, 1464, 2227, 2283, 2308, 2464, 2976, 2990 |
| AclWI | GGATC | 3 cut(s) | 435, 1104, 2857 |
| AcoI | YGGCCR | 1 cut(s) | 2302 |
| AcsI | RAATTY | 9 cut(s) | 231, 577, 978, 1301, 1618, 1708, 1817, 1994, 2534 |
| AcuI | CTGAAG | 5 cut(s) | 989, 1287, 1829, 2649, 3146 |
| AcyI | GRCGYC | 1 cut(s) | 663 |
| AfaI | GTAC | 8 cut(s) | 703, 1637, 1884, 3013, 3074, 3097, 3245, 3290 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1314, 1433, 1543, 3226, 3341, 3342 |
| AflIII | ACRYGT | 4 cut(s) | 876, 1123, 2561, 3069 |
| AhlI | ACTAGT | 1 cut(s) | 2515 |
| AjiI | CACGTC | 1 cut(s) | 877 |
| AjnI | CCWGG | 4 cut(s) | 289, 469, 1307, 2868 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1162, 1194 |
| Alw21I | GWGCWC | 4 cut(s) | 131, 253, 398, 1123 |
| Alw26I | GTCTC | 5 cut(s) | 1515, 2071, 2723, 2782, 3351 |
| AlwI | GGATC | 3 cut(s) | 435, 1104, 2857 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 434, 1615 |
| Ama87I | CYCGRG | 2 cut(s) | 95, 989 |
| AoxI | GGCC | 5 cut(s) | 1545, 1894, 2302, 3217, 3228 |
| ApeKI | GCWGC | 5 cut(s) | 176, 985, 1559, 2099, 2978 |
| ApoI | RAATTY | 9 cut(s) | 231, 577, 978, 1301, 1618, 1708, 1817, 1994, 2534 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1761, 1793 |
| AseI | ATTAAT | 1 cut(s) | 6 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 498, 569, 760, 1354, 2457 |
| AspLEI | GCGC | 2 cut(s) | 94, 223 |
| AspS9I | GGNCC | 2 cut(s) | 59, 2987 |
| AsuC2I | CCSGG | 1 cut(s) | 1576 |
| AsuHPI | GGTGA | 9 cut(s) | 23, 124, 485, 2599, 2650, 2884, 3260, 3292, 3476 |
| AsuII | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| AvaI | CYCGRG | 2 cut(s) | 95, 989 |
| AvaII | GGWCC | 2 cut(s) | 59, 2987 |
| BalI | TGGCCA | 1 cut(s) | 2304 |
| BanI | GGYRCC | 1 cut(s) | 317 |
| BanII | GRGCYC | 1 cut(s) | 131 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1866, 1898 |
| BauI | CACGAG | 1 cut(s) | 1713 |
| BbsI | GAAGAC | 1 cut(s) | 1989 |
| Bbv12I | GWGCWC | 4 cut(s) | 131, 253, 398, 1123 |
| BbvI | GCAGC | 5 cut(s) | 163, 997, 1546, 2111, 2990 |
| BccI | CCATC | 8 cut(s) | 673, 721, 1573, 2294, 3116, 3323, 3470, 3518 |
| BceAI | ACGGC | 1 cut(s) | 980 |
| BciT130I | CCWGG | 4 cut(s) | 291, 471, 1309, 2870 |
| BciVI | GTATCC | 1 cut(s) | 3174 |
| BclI | TGATCA | 2 cut(s) | 2613, 3250 |
| BcnI | CCSGG | 1 cut(s) | 1576 |
| BcoDI | GTCTC | 5 cut(s) | 1515, 2071, 2723, 2782, 3351 |
| BcuI | ACTAGT | 1 cut(s) | 2515 |
| BfaI | CTAG | 6 cut(s) | 54, 149, 165, 369, 609, 2516 |
| BfmI | CTRYAG | 8 cut(s) | 747, 811, 1188, 1218, 1851, 2259, 2686, 2916 |
| BfoI | RGCGCY | 1 cut(s) | 95 |
| BfuI | GTATCC | 1 cut(s) | 3174 |
| BglII | AGATCT | 2 cut(s) | 347, 1602 |
| BisI | GCNGC | 5 cut(s) | 177, 986, 1560, 2100, 2979 |
| BlpI | GCTNAGC | 1 cut(s) | 594 |
| BlsI | GCNGC | 5 cut(s) | 178, 987, 1561, 2101, 2980 |
| BmcAI | AGTACT | 2 cut(s) | 3013, 3290 |
| Bme1390I | CCNGG | 5 cut(s) | 291, 471, 1309, 1576, 2870 |
| Bme18I | GGWCC | 2 cut(s) | 59, 2987 |
| BmeT110I | CYCGRG | 2 cut(s) | 95, 989 |
| BmgBI | CACGTC | 1 cut(s) | 877 |
| BmgT120I | GGNCC | 2 cut(s) | 59, 2987 |
| BmiI | GGNNCC | 4 cut(s) | 319, 2124, 2695, 3298 |
| BmrFI | CCNGG | 5 cut(s) | 291, 471, 1309, 1576, 2870 |
| BmrI | ACTGGG | 3 cut(s) | 192, 531, 2412 |
| BmsI | GCATC | 4 cut(s) | 901, 1413, 1702, 3025 |
| BmuI | ACTGGG | 3 cut(s) | 192, 531, 2412 |
| BoxI | GACNNNNGTC | 1 cut(s) | 924 |
| BpiI | GAAGAC | 1 cut(s) | 1989 |
| BpmI | CTGGAG | 2 cut(s) | 1452, 2852 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2127 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 594 |
| Bpu14I | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| BpuEI | CTTGAG | 2 cut(s) | 671, 3103 |
| BpuMI | CCSGG | 1 cut(s) | 1576 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3054 |
| BsaHI | GRCGYC | 1 cut(s) | 663 |
| BsaWI | WCCGGW | 1 cut(s) | 3541 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1282, 1312 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1314, 1433, 1543, 3226, 3341, 3342 |
| Bse3DI | GCAATG | 2 cut(s) | 423, 3454 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3054 |
| BseBI | CCWGG | 4 cut(s) | 291, 471, 1309, 2870 |
| BseGI | GGATG | 4 cut(s) | 640, 1584, 2305, 3394 |
| BseJI | GATNNNNATC | 1 cut(s) | 3054 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1314, 1433, 1543, 3226, 3341, 3342 |
| BseMI | GCAATG | 2 cut(s) | 423, 3454 |
| BseMII | CTCAG | 5 cut(s) | 116, 585, 914, 1040, 2118 |
| BseRI | GAGGAG | 3 cut(s) | 1449, 2391, 3030 |
| BseXI | GCAGC | 5 cut(s) | 163, 997, 1546, 2111, 2990 |
| BseYI | CCCAGC | 1 cut(s) | 589 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2287, 3542 |
| BshFI | GGCC | 5 cut(s) | 1547, 1896, 2304, 3219, 3230 |
| BshNI | GGYRCC | 1 cut(s) | 317 |
| BsiEI | CGRYCG | 2 cut(s) | 2287, 3542 |
| BsiHKAI | GWGCWC | 4 cut(s) | 131, 253, 398, 1123 |
| BsiHKCI | CYCGRG | 2 cut(s) | 95, 989 |
| BsiSI | CCGG | 3 cut(s) | 1575, 1918, 3542 |
| BslFI | GGGAC | 3 cut(s) | 452, 1782, 3318 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1314, 1433, 1543, 3226, 3341, 3342 |
| BsmAI | GTCTC | 5 cut(s) | 1515, 2071, 2723, 2782, 3351 |
| BsmBI | CGTCTC | 1 cut(s) | 3351 |
| BsmFI | GGGAC | 3 cut(s) | 452, 1782, 3318 |
| BsmI | GAATGC | 5 cut(s) | 584, 1627, 2102, 2285, 2501 |
| BsnI | GGCC | 5 cut(s) | 1547, 1896, 2304, 3219, 3230 |
| BsoBI | CYCGRG | 2 cut(s) | 95, 989 |
| Bsp119I | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| Bsp1286I | GDGCHC | 4 cut(s) | 131, 253, 398, 1123 |
| Bsp1407I | TGTACA | 1 cut(s) | 3072 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 594 |
| Bsp19I | CCATGG | 3 cut(s) | 2110, 2394, 2743 |
| BspACI | CCGC | 9 cut(s) | 227, 354, 1464, 2227, 2283, 2308, 2464, 2976, 2990 |
| BspANI | GGCC | 5 cut(s) | 1547, 1896, 2304, 3219, 3230 |
| BspCNI | CTCAG | 5 cut(s) | 117, 586, 915, 1039, 2119 |
| BspLI | GGNNCC | 4 cut(s) | 319, 2124, 2695, 3298 |
| BspPI | GGATC | 3 cut(s) | 435, 1104, 2857 |
| BspT104I | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| BspT107I | GGYRCC | 1 cut(s) | 317 |
| BsrBI | CCGCTC | 1 cut(s) | 1466 |
| BsrDI | GCAATG | 2 cut(s) | 423, 3454 |
| BsrGI | TGTACA | 1 cut(s) | 3072 |
| BssNI | GRCGYC | 1 cut(s) | 663 |
| BssSI | CACGAG | 1 cut(s) | 1713 |
| BssT1I | CCWWGG | 7 cut(s) | 1135, 1891, 2110, 2371, 2394, 2743, 3220 |
| Bst2BI | CACGAG | 1 cut(s) | 1713 |
| Bst2UI | CCWGG | 4 cut(s) | 291, 471, 1309, 2870 |
| Bst4CI | ACNGT | 9 cut(s) | 812, 1907, 2076, 2191, 2333, 3248, 3280, 3433, 3561 |
| Bst6I | CTCTTC | 7 cut(s) | 771, 1436, 3021, 3341, 3349, 3481, 3544 |
| BstACI | GRCGYC | 1 cut(s) | 663 |
| BstAUI | TGTACA | 1 cut(s) | 3072 |
| BstBI | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| BstC8I | GCNNGC | 7 cut(s) | 249, 545, 885, 1545, 1725, 2293, 2306 |
| BstDSI | CCRYGG | 5 cut(s) | 503, 2110, 2394, 2743, 3560 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1312, 1541, 3224 |
| BstF5I | GGATG | 4 cut(s) | 640, 1584, 2305, 3394 |
| BstH2I | RGCGCY | 1 cut(s) | 95 |
| BstHHI | GCGC | 2 cut(s) | 94, 223 |
| BstMAI | GTCTC | 5 cut(s) | 1515, 2071, 2723, 2782, 3351 |
| BstMCI | CGRYCG | 2 cut(s) | 2287, 3542 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 248, 590, 1847, 2192, 2301, 2978, 3420 |
| BstNI | CCWGG | 4 cut(s) | 291, 471, 1309, 2870 |
| BstNSI | RCATGY | 4 cut(s) | 86, 621, 1127, 3073 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 924 |
| BstSCI | CCNGG | 5 cut(s) | 289, 469, 1307, 1574, 2868 |
| BstSFI | CTRYAG | 8 cut(s) | 747, 811, 1188, 1218, 1851, 2259, 2686, 2916 |
| BstV1I | GCAGC | 5 cut(s) | 163, 997, 1546, 2111, 2990 |
| BstV2I | GAAGAC | 1 cut(s) | 1989 |
| BstX2I | RGATCY | 4 cut(s) | 347, 440, 1602, 2849 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1799, 1944, 2750 |
| BstYI | RGATCY | 4 cut(s) | 347, 440, 1602, 2849 |
| BsuI | GTATCC | 1 cut(s) | 3174 |
| BsuRI | GGCC | 5 cut(s) | 1547, 1896, 2304, 3219, 3230 |
| BtgI | CCRYGG | 5 cut(s) | 503, 2110, 2394, 2743, 3560 |
| BtrI | CACGTC | 1 cut(s) | 877 |
| BtsCI | GGATG | 4 cut(s) | 640, 1584, 2305, 3394 |
| BtsIMutI | CAGTG | 6 cut(s) | 205, 372, 723, 1263, 1870, 3438 |
| Cac8I | GCNNGC | 7 cut(s) | 249, 545, 885, 1545, 1725, 2293, 2306 |
| CaiI | CAGNNNCTG | 2 cut(s) | 434, 1615 |
| CfoI | GCGC | 2 cut(s) | 94, 223 |
| Cfr13I | GGNCC | 2 cut(s) | 59, 2987 |
| Csp6I | GTAC | 8 cut(s) | 702, 1636, 1883, 3012, 3073, 3096, 3244, 3289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 840, 875 |
| CviQI | GTAC | 8 cut(s) | 702, 1636, 1883, 3012, 3073, 3096, 3244, 3289 |
| DraI | TTTAAA | 1 cut(s) | 552 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 948, 2603 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 948, 2603 |
| EaeI | YGGCCR | 1 cut(s) | 2302 |
| Eam1104I | CTCTTC | 7 cut(s) | 771, 1436, 3021, 3341, 3349, 3481, 3544 |
| EarI | CTCTTC | 7 cut(s) | 771, 1436, 3021, 3341, 3349, 3481, 3544 |
| Ecl136II | GAGCTC | 1 cut(s) | 129 |
| Eco130I | CCWWGG | 7 cut(s) | 1135, 1891, 2110, 2371, 2394, 2743, 3220 |
| Eco24I | GRGCYC | 1 cut(s) | 131 |
| Eco47I | GGWCC | 2 cut(s) | 59, 2987 |
| Eco53kI | GAGCTC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 5 cut(s) | 989, 1287, 1829, 2649, 3146 |
| Eco88I | CYCGRG | 2 cut(s) | 95, 989 |
| EcoICRI | GAGCTC | 1 cut(s) | 129 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1312, 1541, 3224 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| EcoRI | GAATTC | 2 cut(s) | 577, 1618 |
| EcoRII | CCWGG | 4 cut(s) | 289, 469, 1307, 2868 |
| EcoT14I | CCWWGG | 7 cut(s) | 1135, 1891, 2110, 2371, 2394, 2743, 3220 |
| EcoT38I | GRGCYC | 1 cut(s) | 131 |
| ErhI | CCWWGG | 7 cut(s) | 1135, 1891, 2110, 2371, 2394, 2743, 3220 |
| Esp3I | CGTCTC | 1 cut(s) | 3351 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 606, 638, 1162, 1194, 2647, 2679 |
| FaqI | GGGAC | 3 cut(s) | 452, 1782, 3318 |
| FauI | CCCGC | 2 cut(s) | 234, 1471 |
| FauNDI | CATATG | 1 cut(s) | 2361 |
| FbaI | TGATCA | 2 cut(s) | 2613, 3250 |
| FblI | GTMKAC | 2 cut(s) | 666, 2685 |
| Fnu4HI | GCNGC | 5 cut(s) | 177, 986, 1560, 2100, 2979 |
| FokI | GGATG | 4 cut(s) | 647, 1591, 2312, 3401 |
| FriOI | GRGCYC | 1 cut(s) | 131 |
| Fsp4HI | GCNGC | 5 cut(s) | 177, 986, 1560, 2100, 2979 |
| FspBI | CTAG | 6 cut(s) | 54, 149, 165, 369, 609, 2516 |
| GlaI | GCGC | 2 cut(s) | 93, 222 |
| GluI | GCNGC | 5 cut(s) | 177, 986, 1560, 2100, 2979 |
| GsaI | CCCAGC | 1 cut(s) | 593 |
| GsuI | CTGGAG | 2 cut(s) | 1452, 2852 |
| HaeII | RGCGCY | 1 cut(s) | 95 |
| HaeIII | GGCC | 5 cut(s) | 1547, 1896, 2304, 3219, 3230 |
| HapII | CCGG | 3 cut(s) | 1575, 1918, 3542 |
| HhaI | GCGC | 2 cut(s) | 94, 223 |
| Hin1I | GRCGYC | 1 cut(s) | 663 |
| Hin6I | GCGC | 2 cut(s) | 92, 221 |
| HinP1I | GCGC | 2 cut(s) | 92, 221 |
| HincII | GTYRAC | 3 cut(s) | 667, 1903, 2383 |
| HindII | GTYRAC | 3 cut(s) | 667, 1903, 2383 |
| HindIII | AAGCTT | 2 cut(s) | 846, 3089 |
| HpaI | GTTAAC | 1 cut(s) | 1903 |
| HpaII | CCGG | 3 cut(s) | 1575, 1918, 3542 |
| HphI | GGTGA | 9 cut(s) | 23, 124, 485, 2599, 2650, 2884, 3260, 3292, 3476 |
| Hpy166II | GTNNAC | 7 cut(s) | 667, 1903, 2383, 2686, 2963, 3075, 3283 |
| Hpy8I | GTNNAC | 7 cut(s) | 667, 1903, 2383, 2686, 2963, 3075, 3283 |
| Hpy99I | CGWCG | 2 cut(s) | 668, 2505 |
| HpyAV | CCTTC | 7 cut(s) | 468, 865, 1262, 2258, 2468, 2943, 3220 |
| HpyCH4III | ACNGT | 9 cut(s) | 812, 1907, 2076, 2191, 2333, 3248, 3280, 3433, 3561 |
| HpyCH4IV | ACGT | 6 cut(s) | 663, 876, 1254, 2134, 2503, 2561 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 248, 590, 1847, 2192, 2301, 2978, 3420 |
| HpySE526I | ACGT | 6 cut(s) | 663, 876, 1254, 2134, 2503, 2561 |
| Hsp92I | GRCGYC | 1 cut(s) | 663 |
| HspAI | GCGC | 2 cut(s) | 92, 221 |
| Ksp22I | TGATCA | 2 cut(s) | 2613, 3250 |
| KspAI | GTTAAC | 1 cut(s) | 1903 |
| Lsp1109I | GCAGC | 5 cut(s) | 163, 997, 1546, 2111, 2990 |
| LweI | GCATC | 4 cut(s) | 901, 1413, 1702, 3025 |
| MaeI | CTAG | 6 cut(s) | 54, 149, 165, 369, 609, 2516 |
| MaeII | ACGT | 6 cut(s) | 663, 876, 1254, 2134, 2503, 2561 |
| MbiI | CCGCTC | 1 cut(s) | 1466 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MflI | RGATCY | 4 cut(s) | 347, 440, 1602, 2849 |
| MhlI | GDGCHC | 4 cut(s) | 131, 253, 398, 1123 |
| MlsI | TGGCCA | 1 cut(s) | 2304 |
| MluNI | TGGCCA | 1 cut(s) | 2304 |
| MlyI | GAGTC | 5 cut(s) | 37, 320, 934, 1804, 3305 |
| MmeI | TCCRAC | 3 cut(s) | 831, 919, 3240 |
| Mox20I | TGGCCA | 1 cut(s) | 2304 |
| MroXI | GAANNNNTTC | 5 cut(s) | 498, 569, 760, 1354, 2457 |
| MscI | TGGCCA | 1 cut(s) | 2304 |
| MslI | CAYNNNNRTG | 5 cut(s) | 552, 1128, 1832, 2016, 2724 |
| Msp20I | TGGCCA | 1 cut(s) | 2304 |
| MspA1I | CMGCKG | 3 cut(s) | 593, 1559, 2308 |
| MspI | CCGG | 3 cut(s) | 1575, 1918, 3542 |
| MspR9I | CCNGG | 5 cut(s) | 291, 471, 1309, 1576, 2870 |
| MunI | CAATTG | 1 cut(s) | 186 |
| Mva1269I | GAATGC | 5 cut(s) | 584, 1627, 2102, 2285, 2501 |
| MvaI | CCWGG | 4 cut(s) | 291, 471, 1309, 2870 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 248, 590, 1847, 2192, 2301, 2978, 3420 |
| NciI | CCSGG | 1 cut(s) | 1576 |
| NcoI | CCATGG | 3 cut(s) | 2110, 2394, 2743 |
| NdeI | CATATG | 1 cut(s) | 2361 |
| NlaIV | GGNNCC | 4 cut(s) | 319, 2124, 2695, 3298 |
| NmeAIII | GCCGAG | 1 cut(s) | 3409 |
| NmuCI | GTSAC | 5 cut(s) | 29, 112, 1130, 1651, 2605 |
| NspI | RCATGY | 4 cut(s) | 86, 621, 1127, 3073 |
| NspV | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| PaeR7I | CTCGAG | 2 cut(s) | 95, 989 |
| PciI | ACATGT | 2 cut(s) | 1123, 3069 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2337, 3333 |
| PctI | GAATGC | 5 cut(s) | 584, 1627, 2102, 2285, 2501 |
| PdmI | GAANNNNTTC | 5 cut(s) | 498, 569, 760, 1354, 2457 |
| PfeI | GAWTC | 9 cut(s) | 13, 527, 605, 1175, 1679, 2208, 2540, 3055, 3338 |
| PkrI | GCNGC | 5 cut(s) | 178, 987, 1561, 2101, 2980 |
| PleI | GAGTC | 5 cut(s) | 36, 320, 933, 1803, 3305 |
| PpsI | GAGTC | 5 cut(s) | 36, 320, 933, 1803, 3305 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| PscI | ACATGT | 2 cut(s) | 1123, 3069 |
| PshAI | GACNNNNGTC | 1 cut(s) | 924 |
| PshBI | ATTAAT | 1 cut(s) | 6 |
| PsiI | TTATAA | 1 cut(s) | 1089 |
| Psp124BI | GAGCTC | 1 cut(s) | 131 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| Psp6I | CCWGG | 4 cut(s) | 289, 469, 1307, 2868 |
| PspFI | CCCAGC | 1 cut(s) | 589 |
| PspGI | CCWGG | 4 cut(s) | 289, 469, 1307, 2868 |
| PspN4I | GGNNCC | 4 cut(s) | 319, 2124, 2695, 3298 |
| PspPI | GGNCC | 2 cut(s) | 59, 2987 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| PstNI | CAGNNNCTG | 2 cut(s) | 434, 1615 |
| PsuI | RGATCY | 4 cut(s) | 347, 440, 1602, 2849 |
| PvuII | CAGCTG | 2 cut(s) | 593, 1559 |
| RsaI | GTAC | 8 cut(s) | 703, 1637, 1884, 3013, 3074, 3097, 3245, 3290 |
| RsaNI | GTAC | 8 cut(s) | 702, 1636, 1883, 3012, 3073, 3096, 3244, 3289 |
| RseI | CAYNNNNRTG | 5 cut(s) | 552, 1128, 1832, 2016, 2724 |
| SacI | GAGCTC | 1 cut(s) | 131 |
| SalI | GTCGAC | 1 cut(s) | 665 |
| SatI | GCNGC | 5 cut(s) | 177, 986, 1560, 2100, 2979 |
| Sau96I | GGNCC | 2 cut(s) | 59, 2987 |
| ScaI | AGTACT | 2 cut(s) | 3013, 3290 |
| SchI | GAGTC | 5 cut(s) | 37, 320, 934, 1804, 3305 |
| ScrFI | CCNGG | 5 cut(s) | 291, 471, 1309, 1576, 2870 |
| SduI | GDGCHC | 4 cut(s) | 131, 253, 398, 1123 |
| SfaNI | GCATC | 4 cut(s) | 901, 1413, 1702, 3025 |
| SfcI | CTRYAG | 8 cut(s) | 747, 811, 1188, 1218, 1851, 2259, 2686, 2916 |
| Sfr274I | CTCGAG | 2 cut(s) | 95, 989 |
| SfuI | TTCGAA | 3 cut(s) | 11, 603, 3399 |
| SinI | GGWCC | 2 cut(s) | 59, 2987 |
| SlaI | CTCGAG | 2 cut(s) | 95, 989 |
| SmiI | ATTTAAAT | 1 cut(s) | 552 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 552, 1128, 1832, 2016, 2724 |
| SmlI | CTYRAG | 4 cut(s) | 95, 650, 989, 3082 |
| SmoI | CTYRAG | 4 cut(s) | 95, 650, 989, 3082 |
| SpeI | ACTAGT | 1 cut(s) | 2515 |
| SsiI | CCGC | 9 cut(s) | 227, 354, 1464, 2227, 2283, 2308, 2464, 2976, 2990 |
| SspI | AATATT | 1 cut(s) | 658 |
| SspMI | CTAG | 6 cut(s) | 54, 149, 165, 369, 609, 2516 |
| SstI | GAGCTC | 1 cut(s) | 131 |
| StyD4I | CCNGG | 5 cut(s) | 289, 469, 1307, 1574, 2868 |
| StyI | CCWWGG | 7 cut(s) | 1135, 1891, 2110, 2371, 2394, 2743, 3220 |
| SwaI | ATTTAAAT | 1 cut(s) | 552 |
| TaaI | ACNGT | 9 cut(s) | 812, 1907, 2076, 2191, 2333, 3248, 3280, 3433, 3561 |
| TaiI | ACGT | 6 cut(s) | 666, 879, 1257, 2137, 2506, 2564 |
| TatI | WGTACW | 4 cut(s) | 1635, 3011, 3072, 3288 |
| TfiI | GAWTC | 9 cut(s) | 13, 527, 605, 1175, 1679, 2208, 2540, 3055, 3338 |
| TscAI | CASTG | 6 cut(s) | 205, 379, 723, 1270, 1870, 3438 |
| TseFI | GTSAC | 5 cut(s) | 29, 112, 1130, 1651, 2605 |
| TseI | GCWGC | 5 cut(s) | 176, 985, 1559, 2099, 2978 |
| Tsp45I | GTSAC | 5 cut(s) | 29, 112, 1130, 1651, 2605 |
| TspGWI | ACGGA | 2 cut(s) | 938, 3193 |
| TspRI | CASTG | 6 cut(s) | 205, 379, 723, 1270, 1870, 3438 |
| VpaK11BI | GGWCC | 2 cut(s) | 59, 2987 |
| VspI | ATTAAT | 1 cut(s) | 6 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1312, 1541, 3224 |
| XapI | RAATTY | 9 cut(s) | 231, 577, 978, 1301, 1618, 1708, 1817, 1994, 2534 |
| XbaI | TCTAGA | 1 cut(s) | 608 |
| XceI | RCATGY | 4 cut(s) | 86, 621, 1127, 3073 |
| XhoI | CTCGAG | 2 cut(s) | 95, 989 |
| XmiI | GTMKAC | 2 cut(s) | 666, 2685 |
| XmnI | GAANNNNTTC | 5 cut(s) | 498, 569, 760, 1354, 2457 |
| XspI | CTAG | 6 cut(s) | 54, 149, 165, 369, 609, 2516 |
| ZraI | GACGTC | 1 cut(s) | 664 |
| ZrmI | AGTACT | 2 cut(s) | 3013, 3290 |