Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

44657756 .. 44659943

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATAGAGGAGAACCACAGATGAGTCGTACCCATTTGGGCAATGGTGCTGCTGCTGACACCACGCCTTTCAAACTTGGTTTATTGGAGCATATTACAGCACTCGACAATTTCTCAACCCCAAGTGAAGTTCTCAGCTCACATTTCCTTTTCTCCTTACCAACTCAAAAACCTCCAATGGCTACTAGCTCAATGGCCTTTCCGATCCAGCATGTTCAAAGATTAGAGAGTGCACAAGTTCAAAAGGCTTGGCATGCCCTTTCCAATCTTCAGATCTCTTCTAGGAGCTACACAAGACCTGGAAAAACTGTTCAACTTAAAAATGCTAGCGCTGAGTTTACTCATGATGCGGGAAGAACTACAGTTGTAAGCTCATGTGACATTAATAAAAGTAGTGGCCATATGCAAACACATCAATACATCGATGAAAGCAATGCCAGGTTAAGTGAAGCTGCAAGCTGTCTGCGCAATGGGTTTCGGTCAAGTAACTACAATGTTGCAGATGCAGGAAAAAGTCTTCGGGGGCATAGTCAGGTCACAGCATCGCTGGTCAAGAATTCTCATTCTCAGGTGTCTGGTGGTTCATTTAGTAATAATAGTGTTCATACCAGCCAAGCGGAAGAATGTTCGAACAATTTGGTGAATGAGATGGATGCTGGTGATGATGACGACATACTTGAGAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

229

Amino Acids

24.85

Weight (kDa)

6.59

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	467
AciI	CCGC	2 cut(s)	350, 617
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	73, 218, 242, 314
AjnI	CCWGG	2 cut(s)	298, 437
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	6 cut(s)	138, 189, 288, 372, 452, 459
AluI	AGCT	6 cut(s)	138, 189, 288, 372, 452, 459
Alw21I	GWGCWC	1 cut(s)	235
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	2 cut(s)	195, 397
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	50, 53, 452
ApoI	RAATTY	1 cut(s)	556
AseI	ATTAAT	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	332, 468
AsuHPI	GGTGA	2 cut(s)	652, 671
AsuII	TTCGAA	1 cut(s)	629
AsuNHI	GCTAGC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	37, 40, 439
BccI	CCATC	1 cut(s)	643
BciT130I	CCWGG	2 cut(s)	300, 439
BfaI	CTAG	3 cut(s)	186, 282, 327
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	333
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	51, 54, 453
BlsI	GCNGC	3 cut(s)	52, 55, 454
Bme1390I	CCNGG	2 cut(s)	300, 439
BmrFI	CCNGG	2 cut(s)	300, 439
BmsI	GCATC	4 cut(s)	337, 493, 551, 643
BmtI	GCTAGC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	423
Bse3DI	GCAATG	3 cut(s)	49, 439, 475
BseBI	CCWGG	2 cut(s)	300, 439
BseCI	ATCGAT	1 cut(s)	423
BseGI	GGATG	1 cut(s)	658
BseMI	GCAATG	3 cut(s)	49, 439, 475
BseMII	CTCAG	3 cut(s)	148, 324, 581
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	3 cut(s)	37, 40, 439
BshFI	GGCC	2 cut(s)	197, 399
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	197, 399
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	204, 273
BspACI	CCGC	2 cut(s)	350, 617
BspANI	GGCC	2 cut(s)	197, 399
BspCNI	CTCAG	3 cut(s)	147, 325, 580
BspDI	ATCGAT	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	629
BsrDI	GCAATG	3 cut(s)	49, 439, 475
BssMI	GATC	2 cut(s)	204, 273
Bst2UI	CCWGG	2 cut(s)	300, 439
Bst4CI	ACNGT	2 cut(s)	310, 364
Bst6I	CTCTTC	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	255, 328, 457
BstDEI	CTNAG	3 cut(s)	134, 333, 567
BstF5I	GGATG	1 cut(s)	658
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	332, 468
BstKTI	GATC	2 cut(s)	207, 276
BstMBI	GATC	2 cut(s)	204, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 465
BstNI	CCWGG	2 cut(s)	300, 439
BstNSI	RCATGY	2 cut(s)	215, 257
BstSCI	CCNGG	2 cut(s)	298, 437
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	3 cut(s)	37, 40, 439
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	197, 399
BsuTUI	ATCGAT	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	255, 328, 457
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	332, 468
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	4 cut(s)	212, 254, 344, 375
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	134, 333, 567
DpnI	GATC	2 cut(s)	206, 275
DpnII	GATC	2 cut(s)	204, 273
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	298, 437
FaeI	CATG	4 cut(s)	215, 257, 347, 378
FatI	CATG	4 cut(s)	211, 253, 343, 374
FauI	CCCGC	1 cut(s)	343
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	51, 54, 453
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	3 cut(s)	51, 54, 453
FspBI	CTAG	3 cut(s)	186, 282, 327
FspI	TGCGCA	1 cut(s)	467
GlaI	GCGC	2 cut(s)	331, 467
GluI	GCNGC	3 cut(s)	51, 54, 453
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	197, 399
HhaI	GCGC	2 cut(s)	332, 468
Hin1II	CATG	4 cut(s)	215, 257, 347, 378
Hin6I	GCGC	2 cut(s)	330, 466
HinP1I	GCGC	2 cut(s)	330, 466
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	2 cut(s)	652, 671
Hpy166II	GTNNAC	2 cut(s)	233, 339
Hpy188I	TCNGA	2 cut(s)	204, 273
Hpy188III	TCNNGA	2 cut(s)	344, 553
Hpy8I	GTNNAC	2 cut(s)	233, 339
HpyCH4III	ACNGT	2 cut(s)	310, 364
HpyCH4V	TGCA	5 cut(s)	233, 406, 455, 500, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 465
HpyF3I	CTNAG	3 cut(s)	134, 333, 567
Hsp92II	CATG	4 cut(s)	215, 257, 347, 378
HspAI	GCGC	2 cut(s)	330, 466
Kzo9I	GATC	2 cut(s)	204, 273
LmnI	GCTCC	2 cut(s)	88, 285
Lsp1109I	GCAGC	3 cut(s)	37, 40, 439
LweI	GCATC	4 cut(s)	337, 493, 551, 643
MaeI	CTAG	3 cut(s)	186, 282, 327
MaeIII	GTNAC	3 cut(s)	377, 485, 535
MalI	GATC	2 cut(s)	206, 275
MboI	GATC	2 cut(s)	204, 273
MboII	GAAGA	5 cut(s)	260, 270, 366, 509, 632
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	3 cut(s)	109, 556, 634
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	3 cut(s)	318, 384, 443
Msp20I	TGGCCA	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	300, 439
MvaI	CCWGG	2 cut(s)	300, 439
MwoI	GCNNNNNNNGC	2 cut(s)	254, 465
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	2 cut(s)	204, 273
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	215, 257, 347, 378
NmuCI	GTSAC	2 cut(s)	377, 535
NsbI	TGCGCA	1 cut(s)	467
NspI	RCATGY	2 cut(s)	215, 257
NspV	TTCGAA	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	52, 55, 454
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	298, 437
PspGI	CCWGG	2 cut(s)	298, 437
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	318, 384, 443
SatI	GCNGC	3 cut(s)	51, 54, 453
Sau3AI	GATC	2 cut(s)	204, 273
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	300, 439
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	4 cut(s)	337, 493, 551, 643
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	109, 556, 634
SsiI	CCGC	2 cut(s)	350, 617
SspMI	CTAG	3 cut(s)	186, 282, 327
StyD4I	CCNGG	2 cut(s)	298, 437
TaaI	ACNGT	2 cut(s)	310, 364
TaqI	TCGA	3 cut(s)	105, 423, 629
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	3 cut(s)	109, 556, 634
Tru1I	TTAA	3 cut(s)	318, 384, 443
Tru9I	TTAA	3 cut(s)	318, 384, 443
TseFI	GTSAC	2 cut(s)	377, 535
TseI	GCWGC	3 cut(s)	50, 53, 452
Tsp45I	GTSAC	2 cut(s)	377, 535
TspDTI	ATGAA	4 cut(s)	17, 441, 573, 593
VneI	GTGCAC	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	2 cut(s)	215, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	3 cut(s)	186, 282, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.