Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

9836831 .. 9841572

Gene Structure 4742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGAGTCCGAGAAAAGGAGGAGAGGTTTCTCAAGATCCTCCTCCATACCATGTTCTTCACAAATTGCCTCCTGGTGATAGCCCTTATGTTCGAGCCAAACACGTCCAGTTAGTTGAGAAGGATCCAGAAGCTGCAATAGTATTGTTTTGGAAGGCGATCAATGCCGAAGACAGGGTGGATAGTGCCCTAAAGGACATGGCAATAGTTATGAAGCAGCAAGACAGAGCAGATGAAGCAATTGAAGCAATAATGTCATTCATGGATCGCTGCTCCAAGCAGGCAGAGGAATCCCTATATAACGTACTAATTGACTTGTACAAGGTATTAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

112

Amino Acids

12.71

Weight (kDa)

5.89

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	32, 119, 132, 273
AfaI	GTAC	2 cut(s)	306, 320
AfiI	CCNNNNNNNGG	2 cut(s)	17, 174
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	245
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	4 cut(s)	32, 119, 132, 273
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	134, 217, 270
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	121, 229, 257
BciT130I	CCWGG	1 cut(s)	75
BisI	GCNGC	3 cut(s)	135, 218, 271
BlsI	GCNGC	3 cut(s)	136, 219, 272
Bme1390I	CCNGG	1 cut(s)	75
BmgBI	CACGTC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 174
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	17, 174
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	33, 36
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	121, 229, 257
BslI	CCNNNNNNNGG	2 cut(s)	17, 174
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	37, 124, 159, 265
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	4 cut(s)	32, 119, 132, 273
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	37, 124, 159, 265
Bst2UI	CCWGG	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	282
BstKTI	GATC	4 cut(s)	40, 127, 162, 268
BstMBI	GATC	4 cut(s)	37, 124, 159, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 236, 245
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	121, 229, 257
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	37, 124
BstYI	RGATCY	2 cut(s)	37, 124
BtrI	CACGTC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	305, 319
CviAII	CATG	3 cut(s)	53, 199, 262
CviJI	RGCY	3 cut(s)	84, 98, 134
CviKI_1	RGCY	3 cut(s)	84, 98, 134
CviQI	GTAC	2 cut(s)	305, 319
DpnI	GATC	4 cut(s)	39, 126, 161, 267
DpnII	GATC	4 cut(s)	37, 124, 159, 265
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	3 cut(s)	56, 202, 265
FaiI	YATR	8 cut(s)	49, 54, 90, 200, 212, 263, 298, 300
FatI	CATG	3 cut(s)	52, 198, 261
Fnu4HI	GCNGC	3 cut(s)	135, 218, 271
Fsp4HI	GCNGC	3 cut(s)	135, 218, 271
GluI	GCNGC	3 cut(s)	135, 218, 271
Hin1II	CATG	3 cut(s)	56, 202, 265
HinfI	GANTC	2 cut(s)	7, 290
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	35, 128
HpyAV	CCTTC	2 cut(s)	115, 148
HpyCH4IV	ACGT	2 cut(s)	105, 303
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 236, 245
HpySE526I	ACGT	2 cut(s)	105, 303
Hsp92II	CATG	3 cut(s)	56, 202, 265
Kzo9I	GATC	4 cut(s)	37, 124, 159, 265
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	6 cut(s)	60, 87, 122, 141, 160, 266
Lsp1109I	GCAGC	3 cut(s)	121, 229, 257
MaeII	ACGT	2 cut(s)	105, 303
MalI	GATC	4 cut(s)	39, 126, 161, 267
MboI	GATC	4 cut(s)	37, 124, 159, 265
MboII	GAAGA	3 cut(s)	16, 50, 182
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	37, 124
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	65, 240, 309
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	14, 19, 51, 54, 81, 280
MseI	TTAA	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	164, 236, 245
NdeII	GATC	4 cut(s)	37, 124, 159, 265
NlaIII	CATG	3 cut(s)	56, 202, 265
NlaIV	GGNNCC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	136, 219, 272
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	37, 124
RsaI	GTAC	2 cut(s)	306, 320
RsaNI	GTAC	2 cut(s)	305, 319
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	135, 218, 271
Sau3AI	GATC	4 cut(s)	37, 124, 159, 265
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	5 cut(s)	30, 108, 136, 306, 327
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	3 cut(s)	65, 240, 309
StyD4I	CCNGG	1 cut(s)	73
TaiI	ACGT	2 cut(s)	108, 306
TaqI	TCGA	1 cut(s)	94
TasI	AATT	3 cut(s)	65, 240, 309
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	3 cut(s)	134, 217, 270
TspDTI	ATGAA	4 cut(s)	17, 227, 249, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.