Rmu_sc0000808.1_g000043

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000808.1
OG0000962
Physical Location & Seq
Reverse (-)
199688 .. 202581
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000808.1_g000043.1.cds

Sequence Viewer

Length: 519 bp
atgcaccacccggtttcagacccacatgggttcaaattggggctcgctctttcctctccggtcatgcctctcaaagttttgaggactcgatctgagtcattccatgggactcatagggtccctgtgggtgataccccctacgtcagagccaagaatgttcaggaattactcgacttgggtgcggcagttggtactcaaagccgagggctttctgacgagctctttagcttgcttccaacaaccaaatacaagtgtggaaagcgctaccagaccaatctcgctaagcggcggcgcgtgaggccaaggacgctcctgcttagcccatccccacaagcgcaaaaaggtgtcggaaagcttcctccggtgatgatgcctcagcaaattttggctccggtaggttactggccggagaagcatgtagcaagcatcggcgagaggaatgagggttgtgatggtggtggtgggttgtcgttgataatggttcagggaagagagagagagaaagacaaagagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

172

Amino Acids

18.98

Weight (kDa)

10.1

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 294
AciI CCGC 3 cut(s) 182, 286, 289
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 1 cut(s) 381
AfaI GTAC 1 cut(s) 193
AfeI AGCGCT 1 cut(s) 263
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 3 cut(s) 220, 228, 355
AluI AGCT 3 cut(s) 220, 228, 355
Alw21I GWGCWC 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 263
AoxI GGCC 2 cut(s) 299, 404
ApoI RAATTY 1 cut(s) 381
AspLEI GCGC 3 cut(s) 264, 294, 337
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 140, 376
AvaII GGWCC 1 cut(s) 118
BanII GRGCYC 2 cut(s) 45, 222
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 331, 446
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BcnI CCSGG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 3 cut(s) 183, 287, 290
BlpI GCTNAGC 2 cut(s) 282, 317
BlsI GCNGC 3 cut(s) 184, 288, 291
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 119, 120, 390
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 360, 435
Bpu10I CCTNAGC 1 cut(s) 375
Bpu1102I GCTNAGC 2 cut(s) 282, 317
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 103, 202, 302
BsaWI WCCGGW 3 cut(s) 58, 361, 391
Bse1I ACTGG 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 103, 202, 302
BseGI GGATG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 84, 389
BseNI ACTGG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 301, 406
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 5 cut(s) 11, 59, 362, 392, 407
BslFI GGGAC 2 cut(s) 104, 121
BsmFI GGGAC 2 cut(s) 104, 121
BsnI GGCC 2 cut(s) 301, 406
Bsp1286I GDGCHC 2 cut(s) 45, 222
Bsp143I GATC 1 cut(s) 89
Bsp1720I GCTNAGC 2 cut(s) 282, 317
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 182, 286, 289
BspANI GGCC 2 cut(s) 301, 406
BspCNI CTCAG 2 cut(s) 85, 388
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 119, 120, 390
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 103, 202, 302
BssMI GATC 1 cut(s) 89
BssT1I CCWWGG 2 cut(s) 103, 302
Bst6I CTCTTC 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 45, 230, 424
BstDEI CTNAG 4 cut(s) 93, 282, 317, 375
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 3 cut(s) 264, 294, 337
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 3 cut(s) 298, 307, 412
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 9
BstUI CGCG 1 cut(s) 294
BsuRI GGCC 2 cut(s) 301, 406
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 323
Cac8I GCNNGC 3 cut(s) 45, 230, 424
CfoI GCGC 3 cut(s) 264, 294, 337
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 192
CviAII CATG 4 cut(s) 26, 64, 104, 416
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 4 cut(s) 93, 282, 317, 375
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 103, 302
Eco24I GRGCYC 2 cut(s) 45, 222
Eco47I GGWCC 1 cut(s) 118
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 103, 302
EcoT38I GRGCYC 2 cut(s) 45, 222
ErhI CCWWGG 2 cut(s) 103, 302
FaeI CATG 4 cut(s) 29, 67, 107, 419
FaiI YATR 5 cut(s) 27, 65, 105, 114, 417
FaqI GGGAC 2 cut(s) 104, 121
FatI CATG 4 cut(s) 25, 63, 103, 415
Fnu4HI GCNGC 3 cut(s) 183, 287, 290
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 2 cut(s) 45, 222
Fsp4HI GCNGC 3 cut(s) 183, 287, 290
GlaI GCGC 3 cut(s) 263, 293, 336
GluI GCNGC 3 cut(s) 183, 287, 290
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 2 cut(s) 301, 406
HapII CCGG 5 cut(s) 11, 59, 362, 392, 407
HgaI GACGC 1 cut(s) 316
HhaI GCGC 3 cut(s) 264, 294, 337
Hin1II CATG 4 cut(s) 29, 67, 107, 419
Hin6I GCGC 3 cut(s) 262, 292, 335
HinP1I GCGC 3 cut(s) 262, 292, 335
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 3 cut(s) 85, 95, 109
HpaII CCGG 5 cut(s) 11, 59, 362, 392, 407
HphI GGTGA 2 cut(s) 140, 376
Hpy188I TCNGA 5 cut(s) 19, 94, 146, 214, 350
Hpy188III TCNNGA 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 307, 412
HpyF3I CTNAG 4 cut(s) 93, 282, 317, 375
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 4 cut(s) 29, 67, 107, 419
HspAI GCGC 3 cut(s) 262, 292, 335
KflI GGGWCCC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 315, 394
LweI GCATC 2 cut(s) 360, 435
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 45, 222
MluCI AATT 3 cut(s) 35, 164, 381
MlyI GAGTC 3 cut(s) 79, 103, 104
MmeI TCCRAC 2 cut(s) 260, 328
MnlI CCTC 9 cut(s) 64, 75, 78, 197, 291, 369, 384, 429, 436
MspI CCGG 5 cut(s) 11, 59, 362, 392, 407
MspR9I CCNGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 298, 307, 412
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 103
NdeII GATC 1 cut(s) 89
NlaIII CATG 4 cut(s) 29, 67, 107, 419
NlaIV GGNNCC 3 cut(s) 119, 120, 390
NmeAIII GCCGAG 1 cut(s) 227
NspI RCATGY 1 cut(s) 419
PkrI GCNGC 3 cut(s) 184, 288, 291
PleI GAGTC 3 cut(s) 79, 103, 103
PpsI GAGTC 3 cut(s) 79, 103, 103
PpuMI RGGWCCY 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 119, 120, 390
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 3 cut(s) 183, 287, 290
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 3 cut(s) 79, 103, 104
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 45, 222
SetI ASST 6 cut(s) 144, 222, 230, 346, 357, 400
SfaNI GCATC 2 cut(s) 360, 435
SinI GGWCC 1 cut(s) 118
Sse9I AATT 3 cut(s) 35, 164, 381
SsiI CCGC 3 cut(s) 182, 286, 289
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 2 cut(s) 103, 302
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 88, 171
TasI AATT 3 cut(s) 35, 164, 381
TauI GCSGC 3 cut(s) 185, 289, 292
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 381
XceI RCATGY 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.