Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

29559342 .. 29585857

Gene Structure 26516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGATCTCAAGAGTTGACGAGAAATTCGGTACTAAGCCTTCATCCCAGTCGGAAGGAGTTGTTCATTGGCTTCATACAGGGCTGAGTCACTCCGCTGGTCGTGCTGGAAAACCAATTGTGAAATGGATTCAGGTACTTCAAAGGCTGGTGGACCAATTCCCTCCTTTAAAAGCATTTCATTTTGTCCTTGACGACACTGATGAGTTTCTGGGTTTCAAGCATTTCAAGAAGAAGAAAATGAAGAGTCCGAGAAAAGGAGGAGAGGTTTCTCAAGACCCTCCTGCATACCATGTTCTTCACAAATTGCCTCCTGGTGATAGCCCTTATGTTCGAGCCAAACACGTCCAGTTAGTTGAGAAGGATCCAGAAGCTGCAATAGTATTGTTTTGGAAGGCGATCAATGCGGGAGATAGGGTGGATAGTGCCCGAAAGGACATGGCAATAGTTATGAAGCAGCAAGACAGAGCAAATGAAGCAATTGAAGCAATAATGTCATTCAGGGATCGGTGCTCCAAGCAGGCACAGGAATCCCTAGATAACGTACTAATTGACTTGTACAAGGTGTGTCAAGAACTACAAGGAAAAGGAGAAGTTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

201

Amino Acids

22.64

Weight (kDa)

8.97

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 407
AclWI	GGATC	3 cut(s)	359, 372, 513
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	4 cut(s)	34, 138, 546, 560
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	143, 220, 229, 485
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw21I	GWGCWC	1 cut(s)	515
AlwI	GGATC	3 cut(s)	359, 372, 513
AlwNI	CAGNNNCTG	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	374, 457
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	361, 469
BciT130I	CCWGG	1 cut(s)	315
BfaI	CTAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	375, 458
BlsI	GCNGC	2 cut(s)	376, 459
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	49, 349
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	49, 349
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	361, 469
BsiHKAI	GWGCWC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	430, 515
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	6, 364, 399, 505
BspACI	CCGC	2 cut(s)	96, 407
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	3 cut(s)	359, 372, 513
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	49, 349
BssMI	GATC	4 cut(s)	6, 364, 399, 505
Bst2UI	CCWGG	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	36, 86
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	4 cut(s)	9, 367, 402, 508
BstMBI	GATC	4 cut(s)	6, 364, 399, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 404, 476, 485
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	361, 469
BstX2I	RGATCY	2 cut(s)	6, 364
BstYI	RGATCY	2 cut(s)	6, 364
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	4 cut(s)	33, 137, 545, 559
CviAII	CATG	2 cut(s)	293, 439
CviJI	RGCY	7 cut(s)	40, 73, 85, 148, 324, 338, 374
CviKI_1	RGCY	7 cut(s)	40, 73, 85, 148, 324, 338, 374
CviQI	GTAC	4 cut(s)	33, 137, 545, 559
DdeI	CTNAG	2 cut(s)	36, 86
DpnI	GATC	4 cut(s)	8, 366, 401, 507
DpnII	GATC	4 cut(s)	6, 364, 399, 505
DraI	TTTAAA	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	296, 442
FaiI	YATR	7 cut(s)	78, 289, 294, 330, 440, 452, 604
FatI	CATG	2 cut(s)	292, 438
FauI	CCCGC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	375, 458
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	375, 458
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	2 cut(s)	375, 458
Hin1II	CATG	2 cut(s)	296, 442
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	88, 130, 247, 530
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	19, 154
Hpy188I	TCNGA	2 cut(s)	55, 252
Hpy188III	TCNNGA	5 cut(s)	12, 229, 275, 368, 572
Hpy8I	GTNNAC	2 cut(s)	19, 154
HpyAV	CCTTC	4 cut(s)	50, 51, 355, 388
HpyCH4IV	ACGT	2 cut(s)	345, 543
HpyCH4V	TGCA	2 cut(s)	287, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 404, 476, 485
HpyF3I	CTNAG	2 cut(s)	36, 86
HpySE526I	ACGT	2 cut(s)	345, 543
Hsp92II	CATG	2 cut(s)	296, 442
Kzo9I	GATC	4 cut(s)	6, 364, 399, 505
LmnI	GCTCC	2 cut(s)	518, 599
Lsp1109I	GCAGC	2 cut(s)	361, 469
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	2 cut(s)	345, 543
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	4 cut(s)	8, 366, 401, 507
MboI	GATC	4 cut(s)	6, 364, 399, 505
MboII	GAAGA	4 cut(s)	244, 247, 256, 290
MfeI	CAATTG	2 cut(s)	117, 480
MflI	RGATCY	2 cut(s)	6, 364
MhlI	GDGCHC	2 cut(s)	430, 515
MluCI	AATT	6 cut(s)	26, 117, 158, 305, 480, 549
MlyI	GAGTC	2 cut(s)	97, 256
MmeI	TCCRAC	2 cut(s)	33, 577
MnlI	CCTC	5 cut(s)	174, 254, 259, 291, 321
MseI	TTAA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	2 cut(s)	117, 480
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	104, 404, 476, 485
NdeII	GATC	4 cut(s)	6, 364, 399, 505
NlaIII	CATG	2 cut(s)	296, 442
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	130, 530
PkrI	GCNGC	2 cut(s)	376, 459
PleI	GAGTC	2 cut(s)	96, 255
PpsI	GAGTC	2 cut(s)	96, 255
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	6, 364
RsaI	GTAC	4 cut(s)	34, 138, 546, 560
RsaNI	GTAC	4 cut(s)	33, 137, 545, 559
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	375, 458
Sau3AI	GATC	4 cut(s)	6, 364, 399, 505
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	97, 256
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	430, 515
SetI	ASST	6 cut(s)	138, 270, 348, 376, 546, 567
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	10, 273
SmoI	CTYRAG	2 cut(s)	10, 273
Sse9I	AATT	6 cut(s)	26, 117, 158, 305, 480, 549
SsiI	CCGC	2 cut(s)	96, 407
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	313
TaiI	ACGT	2 cut(s)	348, 546
TaqI	TCGA	1 cut(s)	334
TasI	AATT	6 cut(s)	26, 117, 158, 305, 480, 549
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	130, 530
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	374, 457
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	7 cut(s)	33, 56, 65, 170, 257, 467, 489
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.