Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8389917.1

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 391

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8389917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

attcaggggtaaggtgacaaaatatggagatcggatactcgaaaccatcgaatctaccatcaaggattactacaagacatacaaaaacagcagcagtagcaatgacagtaatgagggaaagaggaaaagagacggtaacaaagatcaaaatggacatgtagaggatgatgacttcaccaaaagcactgatcaatcaaagaaaaggccgtcaaaaaggcagagcaaaactattgaagactatagttatctggagcccgatttcaaccaattagtggatgatgatctagacctgtatggttataattttgaagtgaatgcttcagctacaaagactgttcagaaggttggcggaagagtgcttccgcaatggtcgacgtatggaaatgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

129

Amino Acids

14.81

Weight (kDa)

6.81

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	349, 363
AcuI	CTGAAG	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	234, 263, 309
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	26, 167
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	54, 66
BceAI	ACGGC	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse3DI	GCAATG	2 cut(s)	107, 372
Bse8I	GATNNNNATC	1 cut(s)	280
BseGI	GGATG	2 cut(s)	170, 281
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	2 cut(s)	107, 372
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	29, 143, 188, 281
BspACI	CCGC	2 cut(s)	349, 363
BspANI	GGCC	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	107, 372
BssMI	GATC	4 cut(s)	29, 143, 188, 281
Bst4CI	ACNGT	3 cut(s)	108, 135, 335
Bst6I	CTCTTC	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	170, 281
BstKTI	GATC	4 cut(s)	32, 146, 191, 284
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	4 cut(s)	29, 143, 188, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	170, 281
BtsIMutI	CAGTG	1 cut(s)	184
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	3 cut(s)	206, 254, 324
CviKI_1	RGCY	3 cut(s)	206, 254, 324
DpnI	GATC	4 cut(s)	31, 145, 190, 283
DpnII	GATC	4 cut(s)	29, 143, 188, 281
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EciI	GGCGGA	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	159
FaiI	YATR	7 cut(s)	25, 80, 157, 241, 295, 301, 379
FatI	CATG	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	177, 288
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	51
HphI	GGTGA	2 cut(s)	26, 167
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	34, 340
Hpy188III	TCNNGA	2 cut(s)	249, 285
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	3 cut(s)	108, 135, 335
HpyCH4IV	ACGT	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	188
Kzo9I	GATC	4 cut(s)	29, 143, 188, 281
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	2 cut(s)	234, 303
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	14, 135
MalI	GATC	4 cut(s)	31, 145, 190, 283
MboI	GATC	4 cut(s)	29, 143, 188, 281
MboII	GAAGA	2 cut(s)	246, 364
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	2 cut(s)	267, 302
MnlI	CCTC	3 cut(s)	107, 115, 155
Mva1269I	GAATGC	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	4 cut(s)	29, 143, 188, 281
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	159
PciI	ACATGT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	93
PscI	ACATGT	1 cut(s)	155
PsiI	TTATAA	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	253
SalI	GTCGAC	1 cut(s)	371
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	4 cut(s)	29, 143, 188, 281
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	5 cut(s)	16, 292, 326, 346, 378
SfcI	CTRYAG	1 cut(s)	239
SgeI	CNNG	9 cut(s)	17, 51, 74, 86, 168, 261, 267, 297, 302
Sse9I	AATT	2 cut(s)	267, 302
SsiI	CCGC	2 cut(s)	349, 363
SspMI	CTAG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	108, 135, 335
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	3 cut(s)	40, 49, 372
TasI	AATT	2 cut(s)	267, 302
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	14
TspRI	CASTG	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.