Rroxscaffold_5G00352050

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000962
Physical Location & Seq
Forward (+)
28851128 .. 28862266
11139 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00352050.1

Sequence Viewer

Length: 375 bp
ATGGGGTTTGGCACCACGGACATGATATATGTGTGGAATTGCCCACCGGGTTTCAAACCCACAAGGGTTCAAATTGGGGCTCACTCCTTCCTTTCCGGCCAAGCCTCTCGAGTTTCAAGGACTCGGTCCGAGTTGTTCCATGGGATCGACAAGGTCCCGGTGGGTGATACCCCCTACATCGAGCCATGCAAGAATGTTCAGAAGGGACTACCCCAATACCGGCTCAAGGCCATTAATTGTTCAAAATATGAGCAAACACTAACTAAAAAACCCTACTCCCGGGCCTTGGAGTGGCTCCCCGAAGGCATCACCTTTGCCTTTAGCCACCTCGGCTTCCTAATGCCTTCTCTTTTTCTCCAAGAGTCCCTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

124

Amino Acids

13.97

Weight (kDa)

9.27

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 97
AfiI CCNNNNNNNGG 5 cut(s) 219, 226, 279, 286, 291
AgsI TTSAA 4 cut(s) 55, 71, 117, 243
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 2 cut(s) 108, 279
AoxI GGCC 3 cut(s) 97, 228, 282
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 126, 154, 282
AsuC2I CCSGG 4 cut(s) 48, 158, 280, 281
AsuHPI GGTGA 2 cut(s) 176, 301
AvaI CYCGRG 2 cut(s) 108, 279
AvaII GGWCC 2 cut(s) 126, 154
BanI GGYRCC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 82
BcnI CCSGG 4 cut(s) 48, 158, 280, 281
BglI GCCNNNNNGGC 1 cut(s) 330
Bme1390I CCNGG 4 cut(s) 48, 158, 280, 281
Bme18I GGWCC 2 cut(s) 126, 154
BmeT110I CYCGRG 2 cut(s) 108, 279
BmgT120I GGNCC 3 cut(s) 126, 154, 282
BmiI GGNNCC 3 cut(s) 13, 156, 296
BmrFI CCNGG 4 cut(s) 48, 158, 280, 281
BmsI GCATC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 4 cut(s) 48, 158, 280, 281
BsaJI CCNNGG 5 cut(s) 15, 139, 279, 285, 328
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 226, 279, 286, 291
Bse118I RCCGGY 1 cut(s) 219
BseDI CCNNGG 5 cut(s) 15, 139, 279, 285, 328
BseLI CCNNNNNNNGG 5 cut(s) 219, 226, 279, 286, 291
BshFI GGCC 3 cut(s) 99, 230, 284
BshNI GGYRCC 1 cut(s) 11
BsiHKCI CYCGRG 2 cut(s) 108, 279
BsiSI CCGG 5 cut(s) 47, 96, 158, 220, 280
BslFI GGGAC 3 cut(s) 140, 219, 349
BslI CCNNNNNNNGG 5 cut(s) 219, 226, 279, 286, 291
BsmFI GGGAC 3 cut(s) 140, 219, 349
BsnI GGCC 3 cut(s) 99, 230, 284
BsoBI CYCGRG 2 cut(s) 108, 279
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 139
BspANI GGCC 3 cut(s) 99, 230, 284
BspLI GGNNCC 3 cut(s) 13, 156, 296
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 5 cut(s) 15, 139, 279, 285, 328
BssMI GATC 1 cut(s) 144
BssT1I CCWWGG 2 cut(s) 139, 285
BstDSI CCRYGG 2 cut(s) 15, 139
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 46, 156, 278, 279
BsuRI GGCC 3 cut(s) 99, 230, 284
BtgI CCRYGG 2 cut(s) 15, 139
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 126, 154, 282
Cfr9I CCCGGG 1 cut(s) 279
CpoI CGGWCCG 1 cut(s) 126
CspI CGGWCCG 1 cut(s) 126
CviAII CATG 3 cut(s) 22, 140, 186
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 139, 285
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 126, 154
Eco88I CYCGRG 2 cut(s) 108, 279
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 139, 285
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 139, 285
FaeI CATG 3 cut(s) 25, 143, 189
FaiI YATR 6 cut(s) 23, 28, 30, 141, 187, 249
FaqI GGGAC 3 cut(s) 140, 219, 349
FatI CATG 3 cut(s) 21, 139, 185
FriOI GRGCYC 1 cut(s) 82
HaeIII GGCC 3 cut(s) 99, 230, 284
HapII CCGG 5 cut(s) 47, 96, 158, 220, 280
Hin1II CATG 3 cut(s) 25, 143, 189
HinfI GANTC 2 cut(s) 121, 362
HpaII CCGG 5 cut(s) 47, 96, 158, 220, 280
HphI GGTGA 2 cut(s) 176, 301
Hpy188I TCNGA 2 cut(s) 130, 201
Hpy188III TCNNGA 1 cut(s) 108
HpyAV CCTTC 4 cut(s) 97, 196, 296, 354
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 25, 143, 189
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 5 cut(s) 60, 109, 171, 233, 293
LweI GCATC 1 cut(s) 315
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 37, 72, 235
MlyI GAGTC 2 cut(s) 115, 371
MnlI CCTC 2 cut(s) 115, 338
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 5 cut(s) 47, 96, 158, 220, 280
MspR9I CCNGG 4 cut(s) 48, 158, 280, 281
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 4 cut(s) 48, 158, 280, 281
NcoI CCATGG 1 cut(s) 139
NdeII GATC 1 cut(s) 144
NlaIII CATG 3 cut(s) 25, 143, 189
NlaIV GGNNCC 3 cut(s) 13, 156, 296
NmeAIII GCCGAG 1 cut(s) 309
PaeR7I CTCGAG 1 cut(s) 108
PflFI GACNNNGTC 2 cut(s) 124, 152
PleI GAGTC 2 cut(s) 115, 370
PpsI GAGTC 2 cut(s) 115, 370
PpuMI RGGWCCY 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 13, 156, 296
PspPI GGNCC 3 cut(s) 126, 154, 282
PspPPI RGGWCCY 1 cut(s) 154
PsyI GACNNNGTC 2 cut(s) 124, 152
RseI CAYNNNNRTG 1 cut(s) 20
Rsr2I CGGWCCG 1 cut(s) 126
RsrII CGGWCCG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 3 cut(s) 126, 154, 282
SchI GAGTC 2 cut(s) 115, 371
ScrFI CCNGG 4 cut(s) 48, 158, 280, 281
SduI GDGCHC 1 cut(s) 82
SetI ASST 3 cut(s) 156, 314, 330
SfaNI GCATC 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 108
SinI GGWCC 2 cut(s) 126, 154
SlaI CTCGAG 1 cut(s) 108
SmaI CCCGGG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 108, 224
SmoI CTYRAG 2 cut(s) 108, 224
Sse9I AATT 3 cut(s) 37, 72, 235
StyD4I CCNGG 4 cut(s) 46, 156, 278, 279
StyI CCWWGG 2 cut(s) 139, 285
TaqI TCGA 3 cut(s) 109, 147, 180
TaqII GACCGA 1 cut(s) 114
TasI AATT 3 cut(s) 37, 72, 235
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 32
TspMI CCCGGG 1 cut(s) 279
Tth111I GACNNNGTC 2 cut(s) 124, 152
VpaK11BI GGWCC 2 cut(s) 126, 154
VspI ATTAAT 1 cut(s) 234
XhoI CTCGAG 1 cut(s) 108
XmaI CCCGGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.