Rorug07G0201600

ATP-dependent DNA helicase Q-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17622271 .. 17623835
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0201600.1

Sequence Viewer

Length: 972 bp
ATGGAGAAGCACCAATGCAAGCTCTGCGCTAGGATTTTCAACAATGGCAGAGCATTGGGTGGTCACATGAAGGCTCACATGGCCGTCCTTCCTCTCCCTCCAAAGACCCACCAGCAACTCGCTCCTGCTGAGTCTACTCACTCTGCCTCGTCCTCCTCTTCGTCTTCTGAAGATGAACAGCAAAAGGGTAGTCATCAACAAGAGGAGGAAGATCAGAAGGCTTTGGCTTATGTGTTGAGGGAGAATCCCAAGAAAAGTTTCAGACTTGCAGATCCTGAGTTCTCTTTTCAGGTTGATGCTGGGTCTGTAGTTATTCAAGACAGGGAGAGCGAGACCGAGTCGAGAAACCCAACTCGGAGACGATCCAAGCGGAATCGGAGGATGAGTTTTACAGAGAAATTGGAGCTGAAGAAACCCAAGTTGACAACTTCAACGGTTGACTCGCCGCCGGCCGAGCCGGAGCCGTTGAGCTCAGTGTCCGACACTTCACCGGAAGAGGATGTTGCCATGTGCCTCATGATGCTGTCAAGGGATGTGTGGATGAGAACAAACTATGGAGAAGCAGATCAAGAACAAAATGGGAAAGAGGTGGTGGTTGCAGTGAAAGATGAGGAGTTCGAGCAATTGGAGGAGATCAAATTGAAGAAAGTGAGAGGCAAGAATCGGTGTGACAAATGCAGCAAGCTGTTTCGATCTCATCAAGCAATGTGCGTGCACAGGAAGATTTGCTTTCGAAGCGAAGCAGAGGCCAACAATGCAGCTAGCAGTGCCAGTCTGTTCAAGTGCCCATTTTGCAGCAAGATTTTTGGGTCCGGACAAGCTCTTGGGGGTCACAAAAGGTCTCATCTTTCTGGCACTGCGGGTTACTCGAGAGTCGTCACAAAAGTTAAAGAAGTTCGGGAGAGTTTCATAGATCTCAACATGCCTGCTCCACAAGAAGAAGATGATTTCAGTGTTGTTTCTGATGCTTAA

Protein Analysis

323

Amino Acids

36.18

Weight (kDa)

7.6

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 260 - 283 2.2e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 812
AciI CCGC 3 cut(s) 370, 446, 860
AclWI GGATC 2 cut(s) 266, 357
AcoI YGGCCR 2 cut(s) 81, 450
AcuI CTGAAG 2 cut(s) 189, 428
AgsI TTSAA 5 cut(s) 40, 317, 432, 643, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 6 cut(s) 22, 406, 471, 685, 761, 821
AluI AGCT 6 cut(s) 22, 406, 471, 685, 761, 821
Alw21I GWGCWC 2 cut(s) 473, 717
Alw26I GTCTC 3 cut(s) 326, 352, 846
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 2 cut(s) 266, 357
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 868
Aor13HI TCCGGA 1 cut(s) 812
AoxI GGCC 3 cut(s) 81, 450, 747
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 3 cut(s) 678, 758, 795
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 810
AsuHPI GGTGA 1 cut(s) 480
AsuII TTCGAA 1 cut(s) 733
AsuNHI GCTAGC 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 1 cut(s) 810
BaeGI GKGCMC 2 cut(s) 717, 788
BanII GRGCYC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 473, 717
BbvI GCAGC 3 cut(s) 690, 770, 807
BceAI ACGGC 2 cut(s) 68, 448
BcoDI GTCTC 3 cut(s) 326, 352, 846
BfaI CTAG 2 cut(s) 30, 762
BfmI CTRYAG 1 cut(s) 306
BglII AGATCT 1 cut(s) 913
BisI GCNGC 4 cut(s) 446, 679, 759, 796
BlsI GCNGC 4 cut(s) 447, 680, 760, 797
Bme18I GGWCC 1 cut(s) 810
BmeT110I CYCGRG 1 cut(s) 868
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 2 cut(s) 462, 811
BmsI GCATC 3 cut(s) 286, 510, 955
BmtI GCTAGC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 733
BsaI GGTCTC 2 cut(s) 326, 846
BsaWI WCCGGW 2 cut(s) 490, 812
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 812
BseGI GGATG 4 cut(s) 387, 505, 538, 546
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 120, 267, 486
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 4 cut(s) 145, 218, 626, 644
BseSI GKGCMC 2 cut(s) 717, 788
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 3 cut(s) 690, 770, 807
BseYI CCCAGC 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 3 cut(s) 83, 452, 749
BsiEI CGRYCG 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 473, 717
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 4 cut(s) 449, 458, 491, 813
BsmAI GTCTC 3 cut(s) 326, 352, 846
BsmBI CGTCTC 1 cut(s) 352
BsnI GGCC 3 cut(s) 83, 452, 749
Bso31I GGTCTC 2 cut(s) 326, 846
BsoBI CYCGRG 1 cut(s) 868
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 3 cut(s) 473, 717, 788
Bsp13I TCCGGA 1 cut(s) 812
Bsp143I GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
BspACI CCGC 3 cut(s) 370, 446, 860
BspANI GGCC 3 cut(s) 83, 452, 749
BspCNI CTCAG 3 cut(s) 121, 268, 485
BspEI TCCGGA 1 cut(s) 812
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 2 cut(s) 462, 811
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 2 cut(s) 266, 357
BspT104I TTCGAA 1 cut(s) 733
BspTNI GGTCTC 2 cut(s) 326, 846
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 771
BssAI RCCGGY 1 cut(s) 448
BssMI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 2 cut(s) 163, 489
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 733
BstC8I GCNNGC 6 cut(s) 20, 450, 683, 713, 763, 927
BstDEI CTNAG 3 cut(s) 129, 276, 472
BstF5I GGATG 4 cut(s) 387, 505, 538, 546
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 7 cut(s) 214, 274, 365, 568, 636, 695, 916
BstMAI GTCTC 3 cut(s) 326, 352, 846
BstMBI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 735, 755, 767, 792
BstNSI RCATGY 1 cut(s) 925
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 2 cut(s) 717, 788
BstV1I GCAGC 3 cut(s) 690, 770, 807
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 271, 913
BstYI RGATCY 2 cut(s) 271, 913
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 3 cut(s) 83, 452, 749
BtsCI GGATG 4 cut(s) 387, 505, 538, 546
BtsI GCAGTG 3 cut(s) 606, 772, 855
BtsIMutI CAGTG 5 cut(s) 480, 606, 772, 855, 958
Cac8I GCNNGC 6 cut(s) 20, 450, 683, 713, 763, 927
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 516
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 810
CviAII CATG 5 cut(s) 67, 79, 508, 517, 922
DdeI CTNAG 3 cut(s) 129, 276, 472
DpnI GATC 7 cut(s) 213, 273, 364, 567, 635, 694, 915
DpnII GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
EaeI YGGCCR 2 cut(s) 81, 450
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 163, 489
EarI CTCTTC 2 cut(s) 163, 489
Ecl136II GAGCTC 1 cut(s) 471
EclXI CGGCCG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 473
Eco31I GGTCTC 2 cut(s) 326, 846
Eco47I GGWCC 1 cut(s) 810
Eco52I CGGCCG 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 2 cut(s) 189, 428
Eco88I CYCGRG 1 cut(s) 868
EcoICRI GAGCTC 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 5 cut(s) 70, 82, 511, 520, 925
FaiI YATR 8 cut(s) 68, 80, 231, 509, 518, 555, 911, 923
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FatI CATG 5 cut(s) 66, 78, 507, 516, 921
FauI CCCGC 1 cut(s) 853
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 4 cut(s) 446, 679, 759, 796
FokI GGATG 4 cut(s) 394, 512, 545, 553
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 4 cut(s) 446, 679, 759, 796
FspBI CTAG 2 cut(s) 30, 762
GlaI GCGC 1 cut(s) 28
GluI GCNGC 4 cut(s) 446, 679, 759, 796
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 3 cut(s) 83, 452, 749
HapII CCGG 4 cut(s) 449, 458, 491, 813
HhaI GCGC 1 cut(s) 29
Hin1II CATG 5 cut(s) 70, 82, 511, 520, 925
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 2 cut(s) 423, 439
HindII GTYRAC 2 cut(s) 423, 439
HinfI GANTC 7 cut(s) 131, 244, 338, 373, 440, 661, 873
HpaII CCGG 4 cut(s) 449, 458, 491, 813
HphI GGTGA 1 cut(s) 480
Hpy166II GTNNAC 4 cut(s) 135, 423, 439, 715
Hpy188I TCNGA 7 cut(s) 169, 216, 263, 357, 378, 481, 964
Hpy188III TCNNGA 8 cut(s) 275, 317, 342, 517, 569, 813, 870, 899
Hpy8I GTNNAC 4 cut(s) 135, 423, 439, 715
HpyAV CCTTC 3 cut(s) 64, 98, 211
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 7 cut(s) 18, 269, 599, 678, 715, 758, 795
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 735, 755, 767, 792
HpyF3I CTNAG 3 cut(s) 129, 276, 472
Hsp92II CATG 5 cut(s) 70, 82, 511, 520, 925
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 812
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
Kzo9I GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
LmnI GCTCC 4 cut(s) 127, 403, 460, 934
Lsp1109I GCAGC 3 cut(s) 690, 770, 807
LweI GCATC 3 cut(s) 286, 510, 955
MaeI CTAG 2 cut(s) 30, 762
MaeIII GTNAC 5 cut(s) 62, 668, 830, 863, 877
MalI GATC 7 cut(s) 213, 273, 364, 567, 635, 694, 915
MboI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
MfeI CAATTG 1 cut(s) 623
MflI RGATCY 2 cut(s) 271, 913
MhlI GDGCHC 3 cut(s) 473, 717, 788
MluCI AATT 3 cut(s) 398, 623, 638
MlyI GAGTC 4 cut(s) 140, 347, 434, 882
MmeI TCCRAC 1 cut(s) 504
MroI TCCGGA 1 cut(s) 812
MroNI GCCGGC 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 2 cut(s) 888, 970
MspI CCGG 4 cut(s) 449, 458, 491, 813
MunI CAATTG 1 cut(s) 623
MwoI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 735, 755, 767, 792
NaeI GCCGGC 1 cut(s) 450
NdeII GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
NgoMIV GCCGGC 1 cut(s) 448
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 5 cut(s) 70, 82, 511, 520, 925
NlaIV GGNNCC 2 cut(s) 462, 811
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 4 cut(s) 62, 668, 830, 877
NspI RCATGY 1 cut(s) 925
NspV TTCGAA 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 868
PagI TCATGA 1 cut(s) 516
PdiI GCCGGC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 244, 373, 661
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 4 cut(s) 447, 680, 760, 797
PleI GAGTC 4 cut(s) 139, 346, 434, 881
PpsI GAGTC 4 cut(s) 139, 346, 434, 881
Psp124BI GAGCTC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 462, 811
PspPI GGNCC 1 cut(s) 810
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 271, 913
PsyI GACNNNGTC 1 cut(s) 337
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 888, 970
SatI GCNGC 4 cut(s) 446, 679, 759, 796
Sau3AI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 4 cut(s) 140, 347, 434, 882
SduI GDGCHC 3 cut(s) 473, 717, 788
SetI ASST 9 cut(s) 24, 294, 408, 473, 591, 687, 763, 823, 842
SfaNI GCATC 3 cut(s) 286, 510, 955
SfcI CTRYAG 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 868
SfuI TTCGAA 1 cut(s) 733
SinI GGWCC 1 cut(s) 810
SlaI CTCGAG 1 cut(s) 868
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
Sse9I AATT 3 cut(s) 398, 623, 638
SsiI CCGC 3 cut(s) 370, 446, 860
SspMI CTAG 2 cut(s) 30, 762
SstI GAGCTC 1 cut(s) 473
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 5 cut(s) 341, 618, 691, 733, 869
TaqII GACCGA 1 cut(s) 350
TasI AATT 3 cut(s) 398, 623, 638
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 3 cut(s) 244, 373, 661
Tru1I TTAA 2 cut(s) 888, 970
Tru9I TTAA 2 cut(s) 888, 970
TscAI CASTG 5 cut(s) 480, 606, 772, 862, 958
TseFI GTSAC 4 cut(s) 62, 668, 830, 877
TseI GCWGC 3 cut(s) 678, 758, 795
Tsp45I GTSAC 4 cut(s) 62, 668, 830, 877
TspDTI ATGAA 3 cut(s) 83, 189, 898
TspRI CASTG 5 cut(s) 480, 606, 772, 862, 958
Tth111I GACNNNGTC 1 cut(s) 337
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 810
XceI RCATGY 1 cut(s) 925
XhoI CTCGAG 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 30, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.