RchiOBHm_Chr5g0019321

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000962
Physical Location & Seq
Reverse (-)
13779947 .. 13784044
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29945

Sequence Viewer

Length: 234 bp
ATGCACCACCCGGTTTCAAACCCACATGGGTTCAAATTGGGGCTCGCTCCTTCCTCTCTGGCCAAGCCTCTCGGAGTTTCAAGGACTCGATCTGAGTCGTTCCATGGGACTCATAAGGTCCCTGTGGGTGATACCCCCTACGTCAGAGCCAAGAATGTTCAGATGAGTAGTGGATGTGTCTGGGGAGTAGTCAACCACCTCAAAGTTGTTAAGGACTCGTCGAAGCTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

77

Amino Acids

8.32

Weight (kDa)

10.22

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 60
AgsI TTSAA 3 cut(s) 18, 34, 81
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 118
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 2 cut(s) 104, 121
BsmFI GGGAC 2 cut(s) 104, 121
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 103
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 1 cut(s) 92
BstMBI GATC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 118
CviAII CATG 2 cut(s) 26, 104
CviJI RGCY 5 cut(s) 43, 62, 67, 149, 226
CviKI_1 RGCY 5 cut(s) 43, 62, 67, 149, 226
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 29, 107
FaiI YATR 3 cut(s) 27, 105, 114
FaqI GGGAC 2 cut(s) 104, 121
FatI CATG 2 cut(s) 25, 103
FokI GGATG 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 29, 107
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 85, 95, 109, 215
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 74, 94, 146, 162
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 29, 107
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 24, 44, 135, 166
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 4 cut(s) 79, 103, 104, 209
MnlI CCTC 3 cut(s) 64, 78, 209
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 11
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 103
NdeII GATC 1 cut(s) 89
NlaIII CATG 2 cut(s) 29, 107
NlaIV GGNNCC 1 cut(s) 120
PleI GAGTC 4 cut(s) 79, 103, 103, 209
PpsI GAGTC 4 cut(s) 79, 103, 103, 209
PpuMI RGGWCCY 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 4 cut(s) 79, 103, 104, 209
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 45
SetI ASST 4 cut(s) 120, 144, 201, 228
SinI GGWCC 1 cut(s) 118
Sse9I AATT 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 103
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 88, 221
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.