ATP-dependent DNA helicase Q-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 415 - 582 | 2.6e-25 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 619 - 726 | 1e-19 | Helicase conserved C-terminal domain |
| RecQ_Zn_bind | PF16124 | 737 - 819 | 5e-15 | RecQ zinc-binding |
| RQC | PF09382 | 826 - 942 | 3.7e-20 | RQC domain |
| HRDC | PF00570 | 984 - 1051 | 2.6e-11 | HRDC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3405 |
| Acc16I | TGCGCA | 2 cut(s) | 467, 2345 |
| Acc36I | ACCTGC | 1 cut(s) | 2438 |
| AccB1I | GGYRCC | 1 cut(s) | 2906 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 703, 2903, 3376 |
| AccI | GTMKAC | 1 cut(s) | 3476 |
| AciI | CCGC | 4 cut(s) | 1237, 1564, 2528, 3467 |
| AclWI | GGATC | 4 cut(s) | 199, 1991, 2004, 2737 |
| AcoI | YGGCCR | 4 cut(s) | 397, 1276, 2176, 2785 |
| AcsI | RAATTY | 3 cut(s) | 556, 1063, 2414 |
| AcuI | CTGAAG | 3 cut(s) | 254, 2868, 3408 |
| AdeI | CACNNNGTG | 1 cut(s) | 703 |
| AfaI | GTAC | 4 cut(s) | 31, 713, 829, 2567 |
| AfeI | AGCGCT | 1 cut(s) | 331 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 703, 1252, 1307, 2903, 3376 |
| AflII | CTTAAG | 1 cut(s) | 2578 |
| AflIII | ACRYGT | 1 cut(s) | 3259 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2616 |
| AjnI | CCWGG | 5 cut(s) | 298, 437, 1088, 1351, 3087 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 294, 326 |
| Alw21I | GWGCWC | 4 cut(s) | 235, 1489, 2943, 3059 |
| Alw26I | GTCTC | 2 cut(s) | 787, 3228 |
| Alw44I | GTGCAC | 1 cut(s) | 231 |
| AlwI | GGATC | 4 cut(s) | 199, 1991, 2004, 2737 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 872 |
| Aor51HI | AGCGCT | 1 cut(s) | 331 |
| AoxI | GGCC | 6 cut(s) | 195, 397, 1276, 2176, 2785, 3308 |
| ApaLI | GTGCAC | 1 cut(s) | 231 |
| ApoI | RAATTY | 3 cut(s) | 556, 1063, 2414 |
| AseI | ATTAAT | 2 cut(s) | 384, 1260 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1691 |
| AspLEI | GCGC | 4 cut(s) | 332, 468, 2103, 2346 |
| AspS9I | GGNCC | 1 cut(s) | 1172 |
| AsuC2I | CCSGG | 1 cut(s) | 2277 |
| AsuHPI | GGTGA | 7 cut(s) | 652, 671, 1519, 2362, 2530, 3130, 3271 |
| AsuII | TTCGAA | 2 cut(s) | 629, 2977 |
| AsuNHI | GCTAGC | 1 cut(s) | 326 |
| AvaII | GGWCC | 1 cut(s) | 1172 |
| BaeGI | GKGCMC | 1 cut(s) | 235 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1692, 1725 |
| BalI | TGGCCA | 3 cut(s) | 399, 1278, 2178 |
| BamHI | GGATCC | 1 cut(s) | 1996 |
| BanI | GGYRCC | 1 cut(s) | 2906 |
| BanII | GRGCYC | 4 cut(s) | 2576, 2943, 3059, 3360 |
| BbsI | GAAGAC | 3 cut(s) | 509, 2798, 3345 |
| Bbv12I | GWGCWC | 4 cut(s) | 235, 1489, 2943, 3059 |
| BccI | CCATC | 8 cut(s) | 643, 745, 775, 1163, 2168, 2682, 3158, 3170 |
| BceAI | ACGGC | 2 cut(s) | 2399, 3295 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 793, 827 |
| BciT130I | CCWGG | 5 cut(s) | 300, 439, 1090, 1353, 3089 |
| BciVI | GTATCC | 1 cut(s) | 3132 |
| BclI | TGATCA | 1 cut(s) | 3292 |
| BcnI | CCSGG | 1 cut(s) | 2277 |
| BcoDI | GTCTC | 2 cut(s) | 787, 3228 |
| BfaI | CTAG | 6 cut(s) | 186, 282, 327, 1602, 1737, 3389 |
| BfmI | CTRYAG | 7 cut(s) | 360, 453, 1341, 1725, 2061, 2390, 3343 |
| BfoI | RGCGCY | 1 cut(s) | 333 |
| BfrI | CTTAAG | 1 cut(s) | 2578 |
| BfuAI | ACCTGC | 1 cut(s) | 2438 |
| BfuI | GTATCC | 1 cut(s) | 3132 |
| BglII | AGATCT | 1 cut(s) | 273 |
| Bme1390I | CCNGG | 6 cut(s) | 300, 439, 1090, 1353, 2277, 3089 |
| Bme18I | GGWCC | 1 cut(s) | 1172 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2616 |
| BmgT120I | GGNCC | 1 cut(s) | 1172 |
| BmiI | GGNNCC | 4 cut(s) | 1998, 2575, 2908, 3357 |
| BmrFI | CCNGG | 6 cut(s) | 300, 439, 1090, 1353, 2277, 3089 |
| BmsI | GCATC | 6 cut(s) | 493, 551, 643, 1082, 2195, 2614 |
| BmtI | GCTAGC | 1 cut(s) | 330 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1057 |
| BpiI | GAAGAC | 3 cut(s) | 509, 2798, 3345 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2249, 2281 |
| BpmI | CTGGAG | 4 cut(s) | 1217, 1326, 1689, 3374 |
| Bpu14I | TTCGAA | 2 cut(s) | 629, 2977 |
| BpuEI | CTTGAG | 3 cut(s) | 698, 1034, 1098 |
| BpuMI | CCSGG | 1 cut(s) | 2277 |
| Bsa29I | ATCGAT | 1 cut(s) | 423 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2734, 3384 |
| BsaJI | CCNNGG | 4 cut(s) | 1088, 1181, 2245, 2646 |
| BsaWI | WCCGGW | 1 cut(s) | 2909 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1069, 1099, 1156, 1186, 2558, 2588 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 703, 1252, 1307, 2903, 3376 |
| Bse1I | ACTGG | 5 cut(s) | 1200, 1309, 1706, 2322, 2520 |
| Bse3DI | GCAATG | 4 cut(s) | 49, 439, 3211, 3476 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2734, 3384 |
| BseBI | CCWGG | 5 cut(s) | 300, 439, 1090, 1353, 3089 |
| BseCI | ATCGAT | 1 cut(s) | 423 |
| BseDI | CCNNGG | 4 cut(s) | 1088, 1181, 2245, 2646 |
| BseGI | GGATG | 7 cut(s) | 658, 1048, 1073, 1174, 2488, 3274, 3385 |
| BseJI | GATNNNNATC | 2 cut(s) | 2734, 3384 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 703, 1252, 1307, 2903, 3376 |
| BseMI | GCAATG | 4 cut(s) | 49, 439, 3211, 3476 |
| BseMII | CTCAG | 8 cut(s) | 148, 324, 581, 961, 1481, 2322, 2871, 2933 |
| BseNI | ACTGG | 5 cut(s) | 1200, 1309, 1706, 2322, 2520 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BseSI | GKGCMC | 1 cut(s) | 235 |
| BshFI | GGCC | 6 cut(s) | 197, 399, 1278, 2178, 2787, 3310 |
| BshNI | GGYRCC | 1 cut(s) | 2906 |
| BshVI | ATCGAT | 1 cut(s) | 423 |
| BsiHKAI | GWGCWC | 4 cut(s) | 235, 1489, 2943, 3059 |
| BsiSI | CCGG | 3 cut(s) | 2277, 2788, 2910 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 703, 1252, 1307, 2903, 3376 |
| BsmAI | GTCTC | 2 cut(s) | 787, 3228 |
| BsmBI | CGTCTC | 1 cut(s) | 3228 |
| BsmI | GAATGC | 3 cut(s) | 1124, 2299, 3424 |
| BsnI | GGCC | 6 cut(s) | 197, 399, 1278, 2178, 2787, 3310 |
| Bsp119I | TTCGAA | 2 cut(s) | 629, 2977 |
| Bsp1286I | GDGCHC | 6 cut(s) | 235, 1489, 2576, 2943, 3059, 3360 |
| Bsp1407I | TGTACA | 2 cut(s) | 827, 2565 |
| BspACI | CCGC | 4 cut(s) | 1237, 1564, 2528, 3467 |
| BspANI | GGCC | 6 cut(s) | 197, 399, 1278, 2178, 2787, 3310 |
| BspCNI | CTCAG | 8 cut(s) | 147, 325, 580, 960, 1482, 2323, 2872, 2932 |
| BspDI | ATCGAT | 1 cut(s) | 423 |
| BspHI | TCATGA | 1 cut(s) | 343 |
| BspLI | GGNNCC | 4 cut(s) | 1998, 2575, 2908, 3357 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspMI | ACCTGC | 1 cut(s) | 2438 |
| BspOI | GCTAGC | 1 cut(s) | 330 |
| BspPI | GGATC | 4 cut(s) | 199, 1991, 2004, 2737 |
| BspT104I | TTCGAA | 2 cut(s) | 629, 2977 |
| BspT107I | GGYRCC | 1 cut(s) | 2906 |
| BspTI | CTTAAG | 1 cut(s) | 2578 |
| BsrDI | GCAATG | 4 cut(s) | 49, 439, 3211, 3476 |
| BsrGI | TGTACA | 2 cut(s) | 827, 2565 |
| BsrI | ACTGG | 5 cut(s) | 1200, 1309, 1706, 2322, 2520 |
| BssECI | CCNNGG | 4 cut(s) | 1088, 1181, 2245, 2646 |
| BssT1I | CCWWGG | 2 cut(s) | 2245, 2646 |
| Bst2UI | CCWGG | 5 cut(s) | 300, 439, 1090, 1353, 3089 |
| Bst6I | CTCTTC | 2 cut(s) | 283, 3451 |
| BstAFI | CTTAAG | 1 cut(s) | 2578 |
| BstAUI | TGTACA | 2 cut(s) | 827, 2565 |
| BstBI | TTCGAA | 2 cut(s) | 629, 2977 |
| BstC8I | GCNNGC | 6 cut(s) | 255, 328, 408, 457, 1761, 2770 |
| BstDSI | CCRYGG | 1 cut(s) | 1181 |
| BstEII | GGTNACC | 1 cut(s) | 1223 |
| BstF5I | GGATG | 7 cut(s) | 658, 1048, 1073, 1174, 2488, 3274, 3385 |
| BstH2I | RGCGCY | 1 cut(s) | 333 |
| BstHHI | GCGC | 4 cut(s) | 332, 468, 2103, 2346 |
| BstMAI | GTCTC | 2 cut(s) | 787, 3228 |
| BstNI | CCWGG | 5 cut(s) | 300, 439, 1090, 1353, 3089 |
| BstNSI | RCATGY | 5 cut(s) | 215, 257, 904, 2772, 3263 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1057 |
| BstPI | GGTNACC | 1 cut(s) | 1223 |
| BstSCI | CCNGG | 6 cut(s) | 298, 437, 1088, 1351, 2275, 3087 |
| BstSFI | CTRYAG | 7 cut(s) | 360, 453, 1341, 1725, 2061, 2390, 3343 |
| BstSLI | GKGCMC | 1 cut(s) | 235 |
| BstV2I | GAAGAC | 3 cut(s) | 509, 2798, 3345 |
| BstX2I | RGATCY | 3 cut(s) | 273, 1996, 2729 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1039, 1818, 3029 |
| BstYI | RGATCY | 3 cut(s) | 273, 1996, 2729 |
| Bsu15I | ATCGAT | 1 cut(s) | 423 |
| BsuI | GTATCC | 1 cut(s) | 3132 |
| BsuRI | GGCC | 6 cut(s) | 197, 399, 1278, 2178, 2787, 3310 |
| BsuTUI | ATCGAT | 1 cut(s) | 423 |
| BtgI | CCRYGG | 1 cut(s) | 1181 |
| BtgZI | GCGATG | 1 cut(s) | 528 |
| BtsCI | GGATG | 7 cut(s) | 658, 1048, 1073, 1174, 2488, 3274, 3385 |
| BtsI | GCAGTG | 4 cut(s) | 475, 2033, 2543, 2843 |
| BveI | ACCTGC | 1 cut(s) | 2438 |
| Cac8I | GCNNGC | 6 cut(s) | 255, 328, 408, 457, 1761, 2770 |
| CaiI | CAGNNNCTG | 1 cut(s) | 872 |
| CciI | TCATGA | 1 cut(s) | 343 |
| CfoI | GCGC | 4 cut(s) | 332, 468, 2103, 2346 |
| Cfr13I | GGNCC | 1 cut(s) | 1172 |
| ClaI | ATCGAT | 1 cut(s) | 423 |
| Csp6I | GTAC | 4 cut(s) | 30, 712, 828, 2566 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 804, 839 |
| CviQI | GTAC | 4 cut(s) | 30, 712, 828, 2566 |
| DraI | TTTAAA | 1 cut(s) | 1581 |
| DraIII | CACNNNGTG | 1 cut(s) | 703 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2616 |
| EaeI | YGGCCR | 4 cut(s) | 397, 1276, 2176, 2785 |
| Eam1104I | CTCTTC | 2 cut(s) | 283, 3451 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2616 |
| EarI | CTCTTC | 2 cut(s) | 283, 3451 |
| EciI | GGCGGA | 1 cut(s) | 1226 |
| Ecl136II | GAGCTC | 2 cut(s) | 2941, 3057 |
| Eco130I | CCWWGG | 2 cut(s) | 2245, 2646 |
| Eco24I | GRGCYC | 4 cut(s) | 2576, 2943, 3059, 3360 |
| Eco47I | GGWCC | 1 cut(s) | 1172 |
| Eco47III | AGCGCT | 1 cut(s) | 331 |
| Eco53kI | GAGCTC | 2 cut(s) | 2941, 3057 |
| Eco57I | CTGAAG | 3 cut(s) | 254, 2868, 3408 |
| Eco91I | GGTNACC | 1 cut(s) | 1223 |
| EcoICRI | GAGCTC | 2 cut(s) | 2941, 3057 |
| EcoO65I | GGTNACC | 1 cut(s) | 1223 |
| EcoRI | GAATTC | 1 cut(s) | 556 |
| EcoRII | CCWGG | 5 cut(s) | 298, 437, 1088, 1351, 3087 |
| EcoT14I | CCWWGG | 2 cut(s) | 2245, 2646 |
| EcoT22I | ATGCAT | 2 cut(s) | 1410, 1853 |
| EcoT38I | GRGCYC | 4 cut(s) | 2576, 2943, 3059, 3360 |
| ErhI | CCWWGG | 2 cut(s) | 2245, 2646 |
| Esp3I | CGTCTC | 1 cut(s) | 3228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2797, 2829 |
| FauI | CCCGC | 1 cut(s) | 2521 |
| FauNDI | CATATG | 2 cut(s) | 402, 2235 |
| FbaI | TGATCA | 1 cut(s) | 3292 |
| FblI | GTMKAC | 1 cut(s) | 3476 |
| FokI | GGATG | 7 cut(s) | 665, 1055, 1060, 1181, 2495, 3281, 3392 |
| FriOI | GRGCYC | 4 cut(s) | 2576, 2943, 3059, 3360 |
| FspBI | CTAG | 6 cut(s) | 186, 282, 327, 1602, 1737, 3389 |
| FspI | TGCGCA | 2 cut(s) | 467, 2345 |
| GlaI | GCGC | 4 cut(s) | 331, 467, 2102, 2345 |
| GsuI | CTGGAG | 4 cut(s) | 1217, 1326, 1689, 3374 |
| HaeII | RGCGCY | 1 cut(s) | 333 |
| HaeIII | GGCC | 6 cut(s) | 197, 399, 1278, 2178, 2787, 3310 |
| HapII | CCGG | 3 cut(s) | 2277, 2788, 2910 |
| HhaI | GCGC | 4 cut(s) | 332, 468, 2103, 2346 |
| Hin6I | GCGC | 4 cut(s) | 330, 466, 2101, 2344 |
| HinP1I | GCGC | 4 cut(s) | 330, 466, 2101, 2344 |
| HincII | GTYRAC | 3 cut(s) | 694, 2047, 3477 |
| HindII | GTYRAC | 3 cut(s) | 694, 2047, 3477 |
| HindIII | AAGCTT | 4 cut(s) | 749, 968, 2655, 2826 |
| HpaII | CCGG | 3 cut(s) | 2277, 2788, 2910 |
| HphI | GGTGA | 7 cut(s) | 652, 671, 1519, 2362, 2530, 3130, 3271 |
| Hpy99I | CGWCG | 2 cut(s) | 2385, 3481 |
| HpyAV | CCTTC | 5 cut(s) | 889, 2132, 2473, 2823, 3439 |
| HpyCH4IV | ACGT | 3 cut(s) | 2008, 2182, 3041 |
| HpySE526I | ACGT | 3 cut(s) | 2008, 2182, 3041 |
| HspAI | GCGC | 4 cut(s) | 330, 466, 2101, 2344 |
| Ksp22I | TGATCA | 1 cut(s) | 3292 |
| LmnI | GCTCC | 8 cut(s) | 88, 285, 1338, 2579, 2627, 2938, 3062, 3355 |
| LweI | GCATC | 6 cut(s) | 493, 551, 643, 1082, 2195, 2614 |
| MaeI | CTAG | 6 cut(s) | 186, 282, 327, 1602, 1737, 3389 |
| MaeII | ACGT | 3 cut(s) | 2008, 2182, 3041 |
| MfeI | CAATTG | 2 cut(s) | 1568, 2504 |
| MflI | RGATCY | 3 cut(s) | 273, 1996, 2729 |
| MhlI | GDGCHC | 6 cut(s) | 235, 1489, 2576, 2943, 3059, 3360 |
| MlsI | TGGCCA | 3 cut(s) | 399, 1278, 2178 |
| MluNI | TGGCCA | 3 cut(s) | 399, 1278, 2178 |
| MlyI | GAGTC | 4 cut(s) | 34, 1642, 2235, 2626 |
| MmeI | TCCRAC | 2 cut(s) | 66, 1056 |
| Mox20I | TGGCCA | 3 cut(s) | 399, 1278, 2178 |
| Mph1103I | ATGCAT | 2 cut(s) | 1410, 1853 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1691 |
| MscI | TGGCCA | 3 cut(s) | 399, 1278, 2178 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1890 |
| Msp20I | TGGCCA | 3 cut(s) | 399, 1278, 2178 |
| MspA1I | CMGCKG | 1 cut(s) | 1121 |
| MspCI | CTTAAG | 1 cut(s) | 2578 |
| MspI | CCGG | 3 cut(s) | 2277, 2788, 2910 |
| MspR9I | CCNGG | 6 cut(s) | 300, 439, 1090, 1353, 2277, 3089 |
| MunI | CAATTG | 2 cut(s) | 1568, 2504 |
| Mva1269I | GAATGC | 3 cut(s) | 1124, 2299, 3424 |
| MvaI | CCWGG | 5 cut(s) | 300, 439, 1090, 1353, 3089 |
| NciI | CCSGG | 1 cut(s) | 2277 |
| NdeI | CATATG | 2 cut(s) | 402, 2235 |
| NheI | GCTAGC | 1 cut(s) | 326 |
| NlaIV | GGNNCC | 4 cut(s) | 1998, 2575, 2908, 3357 |
| NmeAIII | GCCGAG | 1 cut(s) | 1567 |
| NmuCI | GTSAC | 6 cut(s) | 377, 535, 1525, 2213, 2485, 3118 |
| NsbI | TGCGCA | 2 cut(s) | 467, 2345 |
| NsiI | ATGCAT | 2 cut(s) | 1410, 1853 |
| NspI | RCATGY | 5 cut(s) | 215, 257, 904, 2772, 3263 |
| NspV | TTCGAA | 2 cut(s) | 629, 2977 |
| PaeI | GCATGC | 2 cut(s) | 257, 2772 |
| PagI | TCATGA | 1 cut(s) | 343 |
| PciI | ACATGT | 1 cut(s) | 3259 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3150 |
| PctI | GAATGC | 3 cut(s) | 1124, 2299, 3424 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1691 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 703, 2903, 3376 |
| PfoI | TCCNGGA | 1 cut(s) | 3087 |
| PleI | GAGTC | 4 cut(s) | 33, 1641, 2234, 2625 |
| PpsI | GAGTC | 4 cut(s) | 33, 1641, 2234, 2625 |
| PscI | ACATGT | 1 cut(s) | 3259 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1057 |
| PshBI | ATTAAT | 2 cut(s) | 384, 1260 |
| PsiI | TTATAA | 1 cut(s) | 3405 |
| Psp124BI | GAGCTC | 2 cut(s) | 2943, 3059 |
| Psp6I | CCWGG | 5 cut(s) | 298, 437, 1088, 1351, 3087 |
| PspEI | GGTNACC | 1 cut(s) | 1223 |
| PspGI | CCWGG | 5 cut(s) | 298, 437, 1088, 1351, 3087 |
| PspN4I | GGNNCC | 4 cut(s) | 1998, 2575, 2908, 3357 |
| PspPI | GGNCC | 1 cut(s) | 1172 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PstNI | CAGNNNCTG | 1 cut(s) | 872 |
| PsuI | RGATCY | 3 cut(s) | 273, 1996, 2729 |
| PvuII | CAGCTG | 1 cut(s) | 1121 |
| RsaI | GTAC | 4 cut(s) | 31, 713, 829, 2567 |
| RsaNI | GTAC | 4 cut(s) | 30, 712, 828, 2566 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1890 |
| SacI | GAGCTC | 2 cut(s) | 2943, 3059 |
| SalI | GTCGAC | 1 cut(s) | 3475 |
| Sau96I | GGNCC | 1 cut(s) | 1172 |
| SchI | GAGTC | 4 cut(s) | 34, 1642, 2235, 2626 |
| ScrFI | CCNGG | 6 cut(s) | 300, 439, 1090, 1353, 2277, 3089 |
| SduI | GDGCHC | 6 cut(s) | 235, 1489, 2576, 2943, 3059, 3360 |
| SfaNI | GCATC | 6 cut(s) | 493, 551, 643, 1082, 2195, 2614 |
| SfcI | CTRYAG | 7 cut(s) | 360, 453, 1341, 1725, 2061, 2390, 3343 |
| SfuI | TTCGAA | 2 cut(s) | 629, 2977 |
| SinI | GGWCC | 1 cut(s) | 1172 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1890 |
| SmlI | CTYRAG | 4 cut(s) | 677, 1013, 1113, 2578 |
| SmoI | CTYRAG | 4 cut(s) | 677, 1013, 1113, 2578 |
| SphI | GCATGC | 2 cut(s) | 257, 2772 |
| SsiI | CCGC | 4 cut(s) | 1237, 1564, 2528, 3467 |
| SspI | AATATT | 3 cut(s) | 685, 1426, 1502 |
| SspMI | CTAG | 6 cut(s) | 186, 282, 327, 1602, 1737, 3389 |
| SstI | GAGCTC | 2 cut(s) | 2943, 3059 |
| StyD4I | CCNGG | 6 cut(s) | 298, 437, 1088, 1351, 2275, 3087 |
| StyI | CCWWGG | 2 cut(s) | 2245, 2646 |
| TaiI | ACGT | 3 cut(s) | 2011, 2185, 3044 |
| TaqII | GACCGA | 1 cut(s) | 468 |
| TatI | WGTACW | 2 cut(s) | 827, 2565 |
| TauI | GCSGC | 1 cut(s) | 1567 |
| TseFI | GTSAC | 6 cut(s) | 377, 535, 1525, 2213, 2485, 3118 |
| Tsp45I | GTSAC | 6 cut(s) | 377, 535, 1525, 2213, 2485, 3118 |
| TspGWI | ACGGA | 1 cut(s) | 1069 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 703, 2903, 3376 |
| Vha464I | CTTAAG | 1 cut(s) | 2578 |
| VneI | GTGCAC | 1 cut(s) | 231 |
| VpaK11BI | GGWCC | 1 cut(s) | 1172 |
| VspI | ATTAAT | 2 cut(s) | 384, 1260 |
| XapI | RAATTY | 3 cut(s) | 556, 1063, 2414 |
| XbaI | TCTAGA | 1 cut(s) | 3388 |
| XceI | RCATGY | 5 cut(s) | 215, 257, 904, 2772, 3263 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 41, 2932 |
| XmiI | GTMKAC | 1 cut(s) | 3476 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1691 |
| XspI | CTAG | 6 cut(s) | 186, 282, 327, 1602, 1737, 3389 |
| Zsp2I | ATGCAT | 2 cut(s) | 1410, 1853 |