Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

44648907 .. 44657197

Gene Structure 8291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG339200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGAGTGGCCATGATGTTTTCGTTTTAATGCCAACTGGAGGGGGTAAGAGCTTGACATATCAGCTCCCTGCTGTAGTTTGTCCAGGCTTAACTTTGGTAATCTCTCCCCTTGTATCTCTTATTCAAGATCAAATAATGCATTTGTTTCAGGCAAATATTCCTGCTGCTTACCTAAGTGCCCATATGGAGTGGAGTGAACAACAGGAGATTCTTAGAGCACTGAGTTCTGAATATTGTAAATACAAGCTGTTATATGTCACCCCTGAAAAAGTTGCCAAAAGTGATTTTCTGTTGCGGCAATTGGAGAGTTTAAATACTCGTCAGTTGCTTACTAGGATTGTAATTGATGAAGCTCACTGTGTGAGTCAGTGGGGGCATGATTTCAGACCAGATTATCAGGCTCTTGGTATCTTAAAGAAGAAGTTCCCAGATACTCCAGTGTTGGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCTCTTGGTCTTGTGAACTGTATTGTTTTCAGGCAAAGTTTTAATCGCCCAAATCTATGGTATTCAGTTATTCCCAAGACAAAGAAATGCATAGAAGATATTGACAAGTTCATTAAAGAAAATCACTATGATGAAAGTGGAATAATATATTGTCTGTCAAGAATGGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGGCATAAAGCAGCATTTTATCATGGTAGTATGGATCCTGCTCAACGTGCCTTTGTCCAGAAGCAGTGGAGTAAAGATGAAGTCAACATTATCTGTGCTACAGTGGCATTTGGAATGGGCATAAACAAGCCTGATGTGCGCTTTGTAATTCATCACTCTCTCCCAAAGTCTATTGAAGGCTATCATCAGGAATGTGGTCGAGCCGGTAGAGATGGCCAACGTGCATCTTGTGTGTTGTATTACAGTTACAGTGACTATATACGAGTCAAACATATGATTAGCCAAGGAATTATAGAGCAAAGCTCATTGACACCCGGACAGAATCGTATGAATGCAGCTAATTCTGGGAGAATACTGGAAACAAATACTGAGAATCTTTTGCGCATGGTGAGTTATTGCGAAAATGATGTTGATTGCCGACGGCTTCTACAGCTTATTCATTTTGGAGAAAAATTTGACTATACAACCTGCAATAAGACTTGCGATAATTGTTTGAAGATCAAGAGTTTCATTGAGAAGGATGTCACAGAGATAGCAAAGCAATTGGTTGAACTGGTGAAATTAGCGGGGCAGCAGTGTTCATCAGCTCATATTTTAGAAGTGTACCGGGGCTCCTTAAGCCAATTTGTCAAGAAACACGGGCATCAGACTTTGAGTCTACATGGAGCAGGAAAACATCTACCCAAGGGAGAAGCTTCCCGTGTATTACGCCATCTTGTTACAGAGGACTTGCTTGTGGAGGAAGTGAAGAAAAGCGATGTTTATGGATCTGTATCATCAATACTAAAGGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCCGGAAGACAATTATGTTAAGATTCCCTTCCTCTGTAAAAGCTTCTAAGCAGTGGAACTCTGAAGTGATTTCAACTAAAGGTTCATTGACATCTGAGAAGCTGATTCCTCCACAAATTGGCACCGGACAACCTCAGTCCAATGGAGATGTGGAGCTCTCTACCCAATTATTTATTTCTTTGAAAATGCTTCGAACTACTCTCATAAGGGAAGCTGATGATCGGGTCATGGCACACCACATATTTGGGAATAAGACGTTGAAAGATTTGAGCTCCATAATTCCCAGAACTAAGGAGGAACTCCTGGAAATATATGGCATTAACAGGGGTAAGGTGACAAAATATGGAGATCGGATACTCGAAACCATCGAATCTACCATCAAGGATTACTACAAGACATACAAAAACAGCAGCAGTAGCAATGACAGTAATGAGGGAAAGAGGAAAAGAGACGGTAACAAAGATCAAAATGGACGTGTAGAGGATGATGACTTCACCAAAAGCACTGATCAATCAAAGAAAAGGCCATCAAAAAGGCAGAGCAAAACTATTGAAGACTATAGTTATCTGGAGCCCGATTTCAACCAATTAGTGGATGATGATCTAGACCTGTATGGTTATAATTTTGAAGTGAATGCTTCAGCTACAAAGACTGTTCAGAAGGTTGGCGGAAGAGTGCTTCCGCAATGGTCGACGTATGGAAATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

741

Amino Acids

83.71

Weight (kDa)

8.5

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 159	2.4e-22	DEAD/DEAH box helicase
Helicase_C	PF00271	196 - 303	4.6e-20	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	314 - 396	2.8e-15	RecQ zinc-binding
RQC	PF09382	403 - 519	2e-20	RQC domain
HRDC	PF00570	561 - 628	1.5e-11	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2136
Acc16I	TGCGCA	1 cut(s)	1076
Acc36I	ACCTGC	1 cut(s)	1169
AccB1I	GGYRCC	1 cut(s)	1637
AccB7I	CCANNNNNTGG	2 cut(s)	1634, 2107
AccI	GTMKAC	2 cut(s)	1351, 2207
AciI	CCGC	4 cut(s)	295, 1259, 2184, 2198
AclWI	GGATC	3 cut(s)	722, 735, 1468
AcoI	YGGCCR	3 cut(s)	7, 907, 1516
AcsI	RAATTY	1 cut(s)	1145
AcuI	CTGAAG	2 cut(s)	1599, 2139
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	1298
AfiI	CCNNNNNNNGG	3 cut(s)	38, 1634, 2107
AflII	CTTAAG	1 cut(s)	1309
AflIII	ACRYGT	1 cut(s)	1990
AhdI	GACNNNNNGTC	1 cut(s)	1347
AjiI	CACGTC	1 cut(s)	1991
AjnI	CCWGG	2 cut(s)	82, 1818
Alw21I	GWGCWC	3 cut(s)	220, 1674, 1790
Alw26I	GTCTC	1 cut(s)	1959
AlwI	GGATC	3 cut(s)	722, 735, 1468
AoxI	GGCC	4 cut(s)	7, 907, 1516, 2039
ApeKI	GCWGC	5 cut(s)	164, 704, 1028, 1264, 1926
ApoI	RAATTY	1 cut(s)	1145
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	834, 1077
AsuC2I	CCSGG	2 cut(s)	1008, 1301
AsuHPI	GGTGA	5 cut(s)	250, 1093, 1261, 1861, 2002
AsuII	TTCGAA	1 cut(s)	1708
BaeGI	GKGCMC	1 cut(s)	181
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BalI	TGGCCA	2 cut(s)	9, 909
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	1 cut(s)	1637
BanII	GRGCYC	4 cut(s)	1307, 1674, 1790, 2091
BbsI	GAAGAC	2 cut(s)	1529, 2076
Bbv12I	GWGCWC	3 cut(s)	220, 1674, 1790
BbvI	GCAGC	5 cut(s)	151, 716, 1040, 1276, 1938
BccI	CCATC	5 cut(s)	899, 1413, 1889, 1901, 2050
BceAI	ACGGC	1 cut(s)	1130
BciT130I	CCWGG	2 cut(s)	84, 1820
BciVI	GTATCC	1 cut(s)	1863
BclI	TGATCA	1 cut(s)	2023
BcnI	CCSGG	2 cut(s)	1008, 1301
BcoDI	GTCTC	1 cut(s)	1959
BfaI	CTAG	3 cut(s)	333, 468, 2120
BfmI	CTRYAG	5 cut(s)	72, 456, 792, 1121, 2074
BfrI	CTTAAG	1 cut(s)	1309
BfuAI	ACCTGC	1 cut(s)	1169
BfuI	GTATCC	1 cut(s)	1863
BisI	GCNGC	6 cut(s)	165, 296, 705, 1029, 1265, 1927
BlsI	GCNGC	6 cut(s)	166, 297, 706, 1030, 1266, 1928
Bme1390I	CCNGG	4 cut(s)	84, 1008, 1301, 1820
BmeRI	GACNNNNNGTC	1 cut(s)	1347
BmgBI	CACGTC	1 cut(s)	1991
BmiI	GGNNCC	4 cut(s)	729, 1306, 1639, 2088
BmrFI	CCNGG	4 cut(s)	84, 1008, 1301, 1820
BmsI	GCATC	2 cut(s)	926, 1345
BpiI	GAAGAC	2 cut(s)	1529, 2076
BplI	GAGNNNNNCTC	2 cut(s)	980, 1012
BpmI	CTGGAG	3 cut(s)	57, 420, 2105
Bpu14I	TTCGAA	1 cut(s)	1708
BpuMI	CCSGG	2 cut(s)	1008, 1301
BsaBI	GATNNNNATC	2 cut(s)	1465, 2115
BsaJI	CCNNGG	3 cut(s)	976, 1300, 1377
BsaWI	WCCGGW	1 cut(s)	1640
BsaXI	ACNNNNNCTCC	2 cut(s)	1289, 1319
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 1634, 2107
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	4 cut(s)	40, 437, 1053, 1251
Bse3DI	GCAATG	2 cut(s)	1942, 2207
Bse8I	GATNNNNATC	2 cut(s)	1465, 2115
BseBI	CCWGG	2 cut(s)	84, 1820
BseDI	CCNNGG	3 cut(s)	976, 1300, 1377
BseGI	GGATG	3 cut(s)	1219, 2005, 2116
BseJI	GATNNNNATC	2 cut(s)	1465, 2115
BseLI	CCNNNNNNNGG	3 cut(s)	38, 1634, 2107
BseMI	GCAATG	2 cut(s)	1942, 2207
BseMII	CTCAG	4 cut(s)	212, 1053, 1602, 1664
BseNI	ACTGG	4 cut(s)	40, 437, 1053, 1251
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	5 cut(s)	151, 716, 1040, 1276, 1938
BshFI	GGCC	4 cut(s)	9, 909, 1518, 2041
BshNI	GGYRCC	1 cut(s)	1637
BsiHKAI	GWGCWC	3 cut(s)	220, 1674, 1790
BsiSI	CCGG	5 cut(s)	897, 1008, 1300, 1519, 1641
BslI	CCNNNNNNNGG	3 cut(s)	38, 1634, 2107
BsmAI	GTCTC	1 cut(s)	1959
BsmBI	CGTCTC	1 cut(s)	1959
BsmI	GAATGC	2 cut(s)	1030, 2155
BsnI	GGCC	4 cut(s)	9, 909, 1518, 2041
Bsp119I	TTCGAA	1 cut(s)	1708
Bsp1286I	GDGCHC	6 cut(s)	181, 220, 1307, 1674, 1790, 2091
Bsp143I	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
BspACI	CCGC	4 cut(s)	295, 1259, 2184, 2198
BspANI	GGCC	4 cut(s)	9, 909, 1518, 2041
BspCNI	CTCAG	4 cut(s)	213, 1054, 1603, 1663
BspLI	GGNNCC	4 cut(s)	729, 1306, 1639, 2088
BspMI	ACCTGC	1 cut(s)	1169
BspPI	GGATC	3 cut(s)	722, 735, 1468
BspT104I	TTCGAA	1 cut(s)	1708
BspT107I	GGYRCC	1 cut(s)	1637
BspTI	CTTAAG	1 cut(s)	1309
BsrDI	GCAATG	2 cut(s)	1942, 2207
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	4 cut(s)	40, 437, 1053, 1251
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	3 cut(s)	976, 1300, 1377
BssMI	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
BssT1I	CCWWGG	2 cut(s)	976, 1377
Bst2UI	CCWGG	2 cut(s)	84, 1820
Bst4CI	ACNGT	9 cut(s)	359, 512, 662, 796, 938, 944, 1943, 1970, 2170
Bst6I	CTCTTC	1 cut(s)	2182
BstAFI	CTTAAG	1 cut(s)	1309
BstBI	TTCGAA	1 cut(s)	1708
BstC8I	GCNNGC	2 cut(s)	492, 1501
BstDEI	CTNAG	8 cut(s)	173, 212, 221, 1062, 1563, 1611, 1650, 1806
BstF5I	GGATG	3 cut(s)	1219, 2005, 2116
BstHHI	GCGC	2 cut(s)	834, 1077
BstKTI	GATC	9 cut(s)	130, 730, 1194, 1463, 1738, 1867, 1981, 2026, 2119
BstMAI	GTCTC	1 cut(s)	1959
BstMBI	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
BstMWI	GCNNNNNNNGC	7 cut(s)	452, 740, 797, 829, 1123, 1311, 1932
BstNI	CCWGG	2 cut(s)	84, 1820
BstNSI	RCATGY	1 cut(s)	1503
BstSCI	CCNGG	4 cut(s)	82, 1006, 1299, 1818
BstSFI	CTRYAG	5 cut(s)	72, 456, 792, 1121, 2074
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	5 cut(s)	151, 716, 1040, 1276, 1938
BstV2I	GAAGAC	2 cut(s)	1529, 2076
BstX2I	RGATCY	2 cut(s)	727, 1460
BstXI	CCANNNNNNTGG	2 cut(s)	549, 1760
BstYI	RGATCY	2 cut(s)	727, 1460
BsuI	GTATCC	1 cut(s)	1863
BsuRI	GGCC	4 cut(s)	9, 909, 1518, 2041
BtgZI	GCGATG	1 cut(s)	1464
BtrI	CACGTC	1 cut(s)	1991
BtsCI	GGATG	3 cut(s)	1219, 2005, 2116
BtsI	GCAGTG	3 cut(s)	764, 1274, 1574
BveI	ACCTGC	1 cut(s)	1169
Cac8I	GCNNGC	2 cut(s)	492, 1501
CfoI	GCGC	2 cut(s)	834, 1077
Cfr10I	RCCGGY	1 cut(s)	896
Csp6I	GTAC	1 cut(s)	1297
CviAII	CATG	7 cut(s)	11, 377, 716, 1078, 1355, 1500, 1744
CviQI	GTAC	1 cut(s)	1297
DdeI	CTNAG	8 cut(s)	173, 212, 221, 1062, 1563, 1611, 1650, 1806
DpnI	GATC	9 cut(s)	129, 729, 1193, 1462, 1737, 1866, 1980, 2025, 2118
DpnII	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
DraI	TTTAAA	1 cut(s)	312
DraIII	CACNNNGTG	1 cut(s)	361
DriI	GACNNNNNGTC	1 cut(s)	1347
EaeI	YGGCCR	3 cut(s)	7, 907, 1516
Eam1104I	CTCTTC	1 cut(s)	2182
Eam1105I	GACNNNNNGTC	1 cut(s)	1347
EarI	CTCTTC	1 cut(s)	2182
EciI	GGCGGA	1 cut(s)	2199
Ecl136II	GAGCTC	2 cut(s)	1672, 1788
Eco130I	CCWWGG	2 cut(s)	976, 1377
Eco24I	GRGCYC	4 cut(s)	1307, 1674, 1790, 2091
Eco53kI	GAGCTC	2 cut(s)	1672, 1788
Eco57I	CTGAAG	2 cut(s)	1599, 2139
EcoICRI	GAGCTC	2 cut(s)	1672, 1788
EcoRII	CCWGG	2 cut(s)	82, 1818
EcoT14I	CCWWGG	2 cut(s)	976, 1377
EcoT22I	ATGCAT	2 cut(s)	141, 584
EcoT38I	GRGCYC	4 cut(s)	1307, 1674, 1790, 2091
ErhI	CCWWGG	2 cut(s)	976, 1377
Esp3I	CGTCTC	1 cut(s)	1959
FaeI	CATG	7 cut(s)	14, 380, 719, 1081, 1358, 1503, 1747
FalI	AAGNNNNNCTT	2 cut(s)	1528, 1560
FatI	CATG	7 cut(s)	10, 376, 715, 1077, 1354, 1499, 1743
FauI	CCCGC	1 cut(s)	1252
FauNDI	CATATG	2 cut(s)	183, 966
FbaI	TGATCA	1 cut(s)	2023
FblI	GTMKAC	2 cut(s)	1351, 2207
Fnu4HI	GCNGC	6 cut(s)	165, 296, 705, 1029, 1265, 1927
FokI	GGATG	3 cut(s)	1226, 2012, 2123
FriOI	GRGCYC	4 cut(s)	1307, 1674, 1790, 2091
Fsp4HI	GCNGC	6 cut(s)	165, 296, 705, 1029, 1265, 1927
FspBI	CTAG	3 cut(s)	333, 468, 2120
FspI	TGCGCA	1 cut(s)	1076
GlaI	GCGC	2 cut(s)	833, 1076
GluI	GCNGC	6 cut(s)	165, 296, 705, 1029, 1265, 1927
GsuI	CTGGAG	3 cut(s)	57, 420, 2105
HaeIII	GGCC	4 cut(s)	9, 909, 1518, 2041
HapII	CCGG	5 cut(s)	897, 1008, 1300, 1519, 1641
HhaI	GCGC	2 cut(s)	834, 1077
Hin1II	CATG	7 cut(s)	14, 380, 719, 1081, 1358, 1503, 1747
Hin6I	GCGC	2 cut(s)	832, 1075
HinP1I	GCGC	2 cut(s)	832, 1075
HincII	GTYRAC	2 cut(s)	778, 2208
HindII	GTYRAC	2 cut(s)	778, 2208
HindIII	AAGCTT	2 cut(s)	1386, 1557
HinfI	GANTC	9 cut(s)	208, 364, 957, 1015, 1066, 1348, 1539, 1621, 1886
HpaII	CCGG	5 cut(s)	897, 1008, 1300, 1519, 1641
HphI	GGTGA	5 cut(s)	250, 1093, 1261, 1861, 2002
Hpy166II	GTNNAC	6 cut(s)	197, 508, 778, 1297, 1352, 2208
Hpy188I	TCNGA	7 cut(s)	229, 386, 1341, 1579, 1612, 1869, 2175
Hpy188III	TCNNGA	8 cut(s)	125, 651, 751, 881, 1195, 1324, 2084, 2120
Hpy8I	GTNNAC	6 cut(s)	197, 508, 778, 1297, 1352, 2208
Hpy99I	CGWCG	2 cut(s)	1116, 2212
HpyAV	CCTTC	4 cut(s)	863, 1204, 1554, 2170
HpyCH4III	ACNGT	9 cut(s)	359, 512, 662, 796, 938, 944, 1943, 1970, 2170
HpyCH4IV	ACGT	5 cut(s)	739, 913, 1772, 1990, 2210
HpyCH4V	TGCA	6 cut(s)	139, 490, 582, 917, 1028, 1164
HpyF10VI	GCNNNNNNNGC	7 cut(s)	452, 740, 797, 829, 1123, 1311, 1932
HpyF3I	CTNAG	8 cut(s)	173, 212, 221, 1062, 1563, 1611, 1650, 1806
HpySE526I	ACGT	5 cut(s)	739, 913, 1772, 1990, 2210
Hsp92II	CATG	7 cut(s)	14, 380, 719, 1081, 1358, 1503, 1747
HspAI	GCGC	2 cut(s)	832, 1075
Ksp22I	TGATCA	1 cut(s)	2023
Kzo9I	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
LmnI	GCTCC	6 cut(s)	69, 1310, 1358, 1669, 1793, 2086
Lsp1109I	GCAGC	5 cut(s)	151, 716, 1040, 1276, 1938
LweI	GCATC	2 cut(s)	926, 1345
MaeI	CTAG	3 cut(s)	333, 468, 2120
MaeII	ACGT	5 cut(s)	739, 913, 1772, 1990, 2210
MaeIII	GTNAC	7 cut(s)	256, 938, 944, 1216, 1411, 1849, 1970
MalI	GATC	9 cut(s)	129, 729, 1193, 1462, 1737, 1866, 1980, 2025, 2118
MboI	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
MboII	GAAGA	8 cut(s)	430, 491, 599, 1201, 1453, 1534, 2081, 2199
MfeI	CAATTG	2 cut(s)	299, 1235
MflI	RGATCY	2 cut(s)	727, 1460
MhlI	GDGCHC	6 cut(s)	181, 220, 1307, 1674, 1790, 2091
MlsI	TGGCCA	2 cut(s)	9, 909
MluNI	TGGCCA	2 cut(s)	9, 909
MlyI	GAGTC	3 cut(s)	373, 966, 1357
Mox20I	TGGCCA	2 cut(s)	9, 909
Mph1103I	ATGCAT	2 cut(s)	141, 584
MroXI	GAANNNNTTC	1 cut(s)	422
MscI	TGGCCA	2 cut(s)	9, 909
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	2 cut(s)	9, 909
MspCI	CTTAAG	1 cut(s)	1309
MspI	CCGG	5 cut(s)	897, 1008, 1300, 1519, 1641
MspR9I	CCNGG	4 cut(s)	84, 1008, 1301, 1820
MunI	CAATTG	2 cut(s)	299, 1235
Mva1269I	GAATGC	2 cut(s)	1030, 2155
MvaI	CCWGG	2 cut(s)	84, 1820
MwoI	GCNNNNNNNGC	7 cut(s)	452, 740, 797, 829, 1123, 1311, 1932
NciI	CCSGG	2 cut(s)	1008, 1301
NdeI	CATATG	2 cut(s)	183, 966
NdeII	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
NlaIII	CATG	7 cut(s)	14, 380, 719, 1081, 1358, 1503, 1747
NlaIV	GGNNCC	4 cut(s)	729, 1306, 1639, 2088
NmuCI	GTSAC	4 cut(s)	256, 944, 1216, 1849
NsbI	TGCGCA	1 cut(s)	1076
NsiI	ATGCAT	2 cut(s)	141, 584
NspI	RCATGY	1 cut(s)	1503
NspV	TTCGAA	1 cut(s)	1708
PaeI	GCATGC	1 cut(s)	1503
PcsI	WCGNNNNNNNCGW	1 cut(s)	1881
PctI	GAATGC	2 cut(s)	1030, 2155
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	6 cut(s)	208, 1015, 1066, 1539, 1621, 1886
PflMI	CCANNNNNTGG	2 cut(s)	1634, 2107
PfoI	TCCNGGA	1 cut(s)	1818
PkrI	GCNGC	6 cut(s)	166, 297, 706, 1030, 1266, 1928
PleI	GAGTC	3 cut(s)	372, 965, 1356
PpsI	GAGTC	3 cut(s)	372, 965, 1356
PsiI	TTATAA	1 cut(s)	2136
Psp124BI	GAGCTC	2 cut(s)	1674, 1790
Psp6I	CCWGG	2 cut(s)	82, 1818
PspGI	CCWGG	2 cut(s)	82, 1818
PspN4I	GGNNCC	4 cut(s)	729, 1306, 1639, 2088
PsuI	RGATCY	2 cut(s)	727, 1460
RsaI	GTAC	1 cut(s)	1298
RsaNI	GTAC	1 cut(s)	1297
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	2 cut(s)	1674, 1790
SalI	GTCGAC	1 cut(s)	2206
SatI	GCNGC	6 cut(s)	165, 296, 705, 1029, 1265, 1927
Sau3AI	GATC	9 cut(s)	127, 727, 1191, 1460, 1735, 1864, 1978, 2023, 2116
SchI	GAGTC	3 cut(s)	373, 966, 1357
ScrFI	CCNGG	4 cut(s)	84, 1008, 1301, 1820
SduI	GDGCHC	6 cut(s)	181, 220, 1307, 1674, 1790, 2091
SfaNI	GCATC	2 cut(s)	926, 1345
SfcI	CTRYAG	5 cut(s)	72, 456, 792, 1121, 2074
SfuI	TTCGAA	1 cut(s)	1708
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	1309
SmoI	CTYRAG	1 cut(s)	1309
SphI	GCATGC	1 cut(s)	1503
SsiI	CCGC	4 cut(s)	295, 1259, 2184, 2198
SspI	AATATT	2 cut(s)	157, 233
SspMI	CTAG	3 cut(s)	333, 468, 2120
SstI	GAGCTC	2 cut(s)	1674, 1790
StyD4I	CCNGG	4 cut(s)	82, 1006, 1299, 1818
StyI	CCWWGG	2 cut(s)	976, 1377
TaaI	ACNGT	9 cut(s)	359, 512, 662, 796, 938, 944, 1943, 1970, 2170
TaiI	ACGT	5 cut(s)	742, 916, 1775, 1993, 2213
TaqI	TCGA	5 cut(s)	892, 1708, 1875, 1884, 2207
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	6 cut(s)	208, 1015, 1066, 1539, 1621, 1886
TseFI	GTSAC	4 cut(s)	256, 944, 1216, 1849
TseI	GCWGC	5 cut(s)	164, 704, 1028, 1264, 1926
Tsp45I	GTSAC	4 cut(s)	256, 944, 1216, 1849
Van91I	CCANNNNNTGG	2 cut(s)	1634, 2107
Vha464I	CTTAAG	1 cut(s)	1309
XapI	RAATTY	1 cut(s)	1145
XbaI	TCTAGA	1 cut(s)	2119
XceI	RCATGY	1 cut(s)	1503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1663
XmiI	GTMKAC	2 cut(s)	1351, 2207
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	3 cut(s)	333, 468, 2120
Zsp2I	ATGCAT	2 cut(s)	141, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.