Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

39917108 .. 39928154

Gene Structure 11047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3636 bp

ATGAATAGAGGAGAACCACAGATGAGTCGTACCCATTTGGGCAATGGTGCTGCTGCTGACACCACGCCTTTCAAACTTGGTTTATTGGAGCATATTACAGCACTCGACAATTTCTCAACCCCAAGTGAAGTTCTCAGCTCACATTTCCTTTTCTCCTTACCGACTCAAAAACCTCCAATGGCTACTAGCTCAATGGCCTTTCCGATCCAGCATGTTCAAAGATTAGAGAGTGCACAAGTTCAAAAGGCTTGGTATGCCCTTTCCAATCTTCAGATCTCTTCCAGGAGCTACACAAGACCTGGAAAAACTGTTCAACTTAAAAATGCTAACGCTGAGTTTACTCATGATGCGGGAAGAACTACAGTTGTAAGCTCATGTGACATTAATAAAAGTAGTGGCCATATGCAAACACATCAATACATCGATGAAAGCAATGCCAGGTTAAGTGAAGCTGCAAGCTGTCTGCGCAGTGGGTTTCGGTCAAGTAACTACAATGTTGCAGATGCAGGAAAAAGTCTTCAGGGGGATAGTCAGGTCACAGCATCGCTGGTCAAGAATTCTCATTCTCAGGTGTCTGGTGGTTCATTTAGCAATAATAGTGTTCATACCAGCCAAGCGAAAGAATGTTCGAACAATTTGGTGAATGAGATGGATGCTGGTGATGATGACGACATACTTGAGAATATTGATGTTGACCACATAGTGGAACAGTACCAATCAAGTTGCACACCTAAACCATCAATTTCCAAGCTTCCACCCCTTACTCCATCTATACAAAAAGATAATACTGTGAGACAAGAATCAACTTGTTTGCCACCAGAATTGTGTACAAATTGCGTTCATGGATTTAAGATAGGACTTTGCCCAGAAGCTGCAAATCATTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAGAAGCTTCGCCAAGATAGGTTGCAGCTCAATAAGCAGATTCAGCCACTTGAGAGTTATCTCTGTTCCAACTCATTGGATGAGGAAAGACGGAAGTCAAATTTTTCTGCATCCACAACAACTCCCAGGCATTTCCAATATGAAACACCTCAAGCAGCTGCATTCAGGAATGACCCCGTGAGATTTGATTCAGAGGTTCATCTACATAATGAGGCAGGAGGATATGCAGAGTGGAATTCATCATCAGTTTCATCCTCTTCTACGGATAAGTTTGGTTTCTCTTCTTTTCCTGTTGAGAGAGAACCTTACATCCCAAAGTTTGTTGAAGTTAACTATACTGAAGGTTCAAATGACAAGAAGTGGAGGGATGGTTCTTTCCCGTGGACTAAAGAACTGGAGGCTAATAATAAGAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATTAATGCTACAATGAGTGGCCATGATGTTTTCGTTTTAATGCCAACTGGAGGGGGTAAGAGCTTGACATATCAGCTCCCTGCTGTAGTTTGTCCAGGCTTAACTTTGGTAATCTCTCCCCTTGTATCTCTTATTCAAGATCAAATAATGCATTTGTTTCAGGCAAATATTCCTGCTGCTTACCTAAGTGCCAATATGGAGTGGAGTGAACAACAGGAGATTCTTAGAGCACTGAGTTCTGAATATTGTAAATACAAGCTGTTATATGTCACCCCTGAAAAGGTTGCCAAAAGTGATTTTCTGTTGCGGCAATTGGAGAGTTTAAATACTCGTCAGTTGCTTACTAGGATTGTAATTGATGAAGCTCACTGTGTGAGTCAGTGGGGGCATGATTTCAGACCAGATTATCAGGCTCTTGGTATCTTAAAGAAGAAGTTCCCAGATACTCCAGTGTTGGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCTCTTGGTCTTGTGAACTGTATTGTTTTCAGGCAAAGTTTTAATCGCCCAAATCTATGGTATTCAGTTATTCCCAAGACAAAGAAATGCATAGAAGATATTGACAAGTTCATTAAAGAAAATCACTATGATGAAAGTGGAATAATATATTGTCTGTCAAGAATGGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGGCATAAAGCAGCATTTTATCATGGTAGTATGGATCCTGCTCAACGTGCCTGTGTCCAGAAGCAGTGGAGTAAAGATGAAGTCAACATTATCTGTGCTACAGTGGCATTTGGAATGGGCATAAACAAACCTGATGTGCGCTTTGTAATTCATCACTCTCTCCCAAAGTCTATTGAAGGCTATCATCAGGAATGTGGTCGAGCCGGTAGAGATGGCCAACGTGCATCTTGTGTGTTGTATTACAGTTACAGTGACTATATACGAGTCAAACATATGATTAGCCAAGGAATTATAGAGCAAAGCTCATTGACACCCGGACAGAATCGTATGAATGCAGCTAATTCTGGGAGAATACTGGAAACAAATACTGAGAATCTTTTGCGCATGGTGAGTTATTGCGAAAATGATGTTGATTGCCGACGGCTTCTACAGCTTATTCATTTTGGAGAAAAATTTGACTATACAACCTGCAATAAGACTTGCGATAATTGTTTGAAGATCAAGAGTTTCATTGAGAAGGATGTCACAGAGATAGCAAAGCAATTGGTTGAACTGGTGAAATTAGCGGGGCAGCAGTGTTCATCAGCTCATATTTTAGAAGTGTACCGGGGCTCCTTAAGCCAATTTACTTTGAGTCTGCATGGAGCAGGAAAACATCTACCCAAGGGAGAAGCTTCCCGTGTATTACGCCATCTTGTTACAGAGGACTTGCTTGTGGAGGAAGTGAAGAAAAGCGATGTTTATGGATCTGTATCATCAATACTAAAGGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCCGGAAGACAATTATGTTAAGATTCCCTTCCTCTGTAAAAGCTTCTAAGCAGTGGAACTCTGAAGTGATTTCAACTAAAGGTTCATTGACATCTGAGAAGCTGATTCCTCCACAAATTGGCACCGGACAACCTCAGTCCAATGGAGATGTGGAGCTCTCTACCCAATTATTTATTTCTTTGAAAATGCTTCGAACTACTCTCATAAGGGAAGCTGATGATCGGGTCATGGCACACCACATATTTGGGAATAAGACGTTGAAAGATTTGAGCTCCATAATTCCCAGAACTAAGGAGGAACTCCTGGAAATATATGGCATTAACAGGGGTAAGGTGACAAAATATGGAGATCGGATACTCGAAACCATCGAATCTACCATCAAGGATTACTACAAGACATACAAAAACAGCAGCAGTAGCAATGACAGTAATGAGGGAAAGAGGAAAAGAGACGGTAACAAAGATCAAAATGGACATGTAGAGGATGATGACTTCACCAAAAGCACTGATCAATCAAAGAAAAGGCCGTCAAAAAGGCAGAGCAAAACTATTGAAGACTATAGTTATCTGGAGCCCGATTTCAACCAATTAGTGGATGATGATCTAGACCTGTATGGTTATAATTTTGAAGTGAATGCTTCAGCTACAAAGACTGTTCAGAAGGTTGGCGGAAGAGTGCTTCCGCAATGGTCGACGTATGGAAATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

1211

Amino Acids

135.83

Weight (kDa)

6.67

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	469 - 636	2.7e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	673 - 780	4.4e-20	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	791 - 873	5.3e-15	RecQ zinc-binding
RQC	PF09382	880 - 989	6e-13	RQC domain
HRDC	PF00570	1031 - 1098	2.7e-11	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3546
Acc16I	TGCGCA	2 cut(s)	467, 2507
Acc36I	ACCTGC	1 cut(s)	2600
AccB1I	GGYRCC	1 cut(s)	3047
AccB7I	CCANNNNNTGG	3 cut(s)	703, 3044, 3517
AccI	GTMKAC	1 cut(s)	3617
AciI	CCGC	6 cut(s)	350, 1399, 1726, 2690, 3594, 3608
AclWI	GGATC	4 cut(s)	199, 2153, 2166, 2878
AcoI	YGGCCR	4 cut(s)	397, 1438, 2338, 2926
AcsI	RAATTY	4 cut(s)	556, 1063, 1198, 2576
AcuI	CTGAAG	5 cut(s)	254, 503, 1323, 3009, 3549
AdeI	CACNNNGTG	2 cut(s)	703, 1792
AfaI	GTAC	4 cut(s)	31, 713, 829, 2729
AfiI	CCNNNNNNNGG	6 cut(s)	703, 1414, 1469, 1699, 3044, 3517
AflII	CTTAAG	1 cut(s)	2740
AflIII	ACRYGT	1 cut(s)	3400
AjnI	CCWGG	6 cut(s)	281, 298, 437, 1088, 1513, 3228
AloI	GAACNNNNNNTCC	6 cut(s)	294, 326, 1257, 1289, 1318, 1350
Alw21I	GWGCWC	4 cut(s)	235, 1651, 3084, 3200
Alw26I	GTCTC	2 cut(s)	787, 3369
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	4 cut(s)	199, 2153, 2166, 2878
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	6 cut(s)	195, 397, 1438, 2338, 2926, 3449
ApaLI	GTGCAC	1 cut(s)	231
ApoI	RAATTY	4 cut(s)	556, 1063, 1198, 2576
AseI	ATTAAT	2 cut(s)	384, 1422
Asp700I	GAANNNNTTC	1 cut(s)	1853
AspLEI	GCGC	3 cut(s)	468, 2265, 2508
AsuC2I	CCSGG	2 cut(s)	2439, 2732
AsuHPI	GGTGA	7 cut(s)	652, 671, 1681, 2524, 2692, 3271, 3412
AsuII	TTCGAA	2 cut(s)	629, 3118
BaeGI	GKGCMC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	1854, 1887
BalI	TGGCCA	3 cut(s)	399, 1440, 2340
BamHI	GGATCC	1 cut(s)	2158
BanI	GGYRCC	1 cut(s)	3047
BanII	GRGCYC	4 cut(s)	2738, 3084, 3200, 3501
BbsI	GAAGAC	3 cut(s)	509, 2939, 3486
Bbv12I	GWGCWC	4 cut(s)	235, 1651, 3084, 3200
BccI	CCATC	8 cut(s)	643, 745, 775, 1325, 2330, 2823, 3299, 3311
BceAI	ACGGC	2 cut(s)	2561, 3436
BciT130I	CCWGG	6 cut(s)	283, 300, 439, 1090, 1515, 3230
BciVI	GTATCC	1 cut(s)	3273
BclI	TGATCA	1 cut(s)	3433
BcnI	CCSGG	2 cut(s)	2439, 2732
BcoDI	GTCTC	2 cut(s)	787, 3369
BfaI	CTAG	4 cut(s)	186, 1764, 1899, 3530
BfmI	CTRYAG	6 cut(s)	360, 1503, 1887, 2223, 2552, 3484
BfrI	CTTAAG	1 cut(s)	2740
BfuAI	ACCTGC	1 cut(s)	2600
BfuI	GTATCC	1 cut(s)	3273
BglII	AGATCT	1 cut(s)	273
Bme1390I	CCNGG	8 cut(s)	283, 300, 439, 1090, 1515, 2439, 2732, 3230
BmiI	GGNNCC	4 cut(s)	2160, 2737, 3049, 3498
BmrFI	CCNGG	8 cut(s)	283, 300, 439, 1090, 1515, 2439, 2732, 3230
BmsI	GCATC	6 cut(s)	337, 493, 551, 643, 1082, 2357
BoxI	GACNNNNGTC	1 cut(s)	1057
BpiI	GAAGAC	3 cut(s)	509, 2939, 3486
BplI	GAGNNNNNCTC	2 cut(s)	2411, 2443
BpmI	CTGGAG	4 cut(s)	1379, 1488, 1851, 3515
Bpu14I	TTCGAA	2 cut(s)	629, 3118
BpuEI	CTTGAG	3 cut(s)	698, 1034, 1098
BpuMI	CCSGG	2 cut(s)	2439, 2732
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	2 cut(s)	2875, 3525
BsaJI	CCNNGG	5 cut(s)	1088, 1343, 2407, 2731, 2787
BsaWI	WCCGGW	1 cut(s)	3050
BsaXI	ACNNNNNCTCC	6 cut(s)	1069, 1099, 1318, 1348, 2720, 2750
Bsc4I	CCNNNNNNNGG	6 cut(s)	703, 1414, 1469, 1699, 3044, 3517
Bse118I	RCCGGY	1 cut(s)	2327
Bse1I	ACTGG	5 cut(s)	1362, 1471, 1868, 2484, 2682
Bse3DI	GCAATG	4 cut(s)	49, 439, 3352, 3617
Bse8I	GATNNNNATC	2 cut(s)	2875, 3525
BseBI	CCWGG	6 cut(s)	283, 300, 439, 1090, 1515, 3230
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	5 cut(s)	1088, 1343, 2407, 2731, 2787
BseGI	GGATG	9 cut(s)	658, 1048, 1073, 1214, 1272, 1336, 2650, 3415, 3526
BseJI	GATNNNNATC	2 cut(s)	2875, 3525
BseLI	CCNNNNNNNGG	6 cut(s)	703, 1414, 1469, 1699, 3044, 3517
BseMI	GCAATG	4 cut(s)	49, 439, 3352, 3617
BseMII	CTCAG	8 cut(s)	148, 324, 581, 961, 1643, 2484, 3012, 3074
BseNI	ACTGG	5 cut(s)	1362, 1471, 1868, 2484, 2682
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	235
BshFI	GGCC	6 cut(s)	197, 399, 1440, 2340, 2928, 3451
BshNI	GGYRCC	1 cut(s)	3047
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	4 cut(s)	235, 1651, 3084, 3200
BsiSI	CCGG	5 cut(s)	2328, 2439, 2731, 2929, 3051
BslI	CCNNNNNNNGG	6 cut(s)	703, 1414, 1469, 1699, 3044, 3517
BsmAI	GTCTC	2 cut(s)	787, 3369
BsmBI	CGTCTC	1 cut(s)	3369
BsmI	GAATGC	3 cut(s)	1124, 2461, 3565
BsnI	GGCC	6 cut(s)	197, 399, 1440, 2340, 2928, 3451
Bsp119I	TTCGAA	2 cut(s)	629, 3118
Bsp1286I	GDGCHC	6 cut(s)	235, 1651, 2738, 3084, 3200, 3501
Bsp1407I	TGTACA	1 cut(s)	827
BspACI	CCGC	6 cut(s)	350, 1399, 1726, 2690, 3594, 3608
BspANI	GGCC	6 cut(s)	197, 399, 1440, 2340, 2928, 3451
BspCNI	CTCAG	8 cut(s)	147, 325, 580, 960, 1644, 2485, 3013, 3073
BspDI	ATCGAT	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	2160, 2737, 3049, 3498
BspMI	ACCTGC	1 cut(s)	2600
BspPI	GGATC	4 cut(s)	199, 2153, 2166, 2878
BspT104I	TTCGAA	2 cut(s)	629, 3118
BspT107I	GGYRCC	1 cut(s)	3047
BspTI	CTTAAG	1 cut(s)	2740
BsrDI	GCAATG	4 cut(s)	49, 439, 3352, 3617
BsrFI	RCCGGY	1 cut(s)	2327
BsrGI	TGTACA	1 cut(s)	827
BsrI	ACTGG	5 cut(s)	1362, 1471, 1868, 2484, 2682
BssAI	RCCGGY	1 cut(s)	2327
BssECI	CCNNGG	5 cut(s)	1088, 1343, 2407, 2731, 2787
BssT1I	CCWWGG	2 cut(s)	2407, 2787
Bst2UI	CCWGG	6 cut(s)	283, 300, 439, 1090, 1515, 3230
Bst6I	CTCTTC	4 cut(s)	283, 1225, 1249, 3592
BstAFI	CTTAAG	1 cut(s)	2740
BstAUI	TGTACA	1 cut(s)	827
BstBI	TTCGAA	2 cut(s)	629, 3118
BstC8I	GCNNGC	3 cut(s)	457, 1923, 2911
BstDSI	CCRYGG	1 cut(s)	1343
BstEII	GGTNACC	1 cut(s)	1385
BstF5I	GGATG	9 cut(s)	658, 1048, 1073, 1214, 1272, 1336, 2650, 3415, 3526
BstHHI	GCGC	3 cut(s)	468, 2265, 2508
BstMAI	GTCTC	2 cut(s)	787, 3369
BstNI	CCWGG	6 cut(s)	283, 300, 439, 1090, 1515, 3230
BstNSI	RCATGY	4 cut(s)	215, 904, 2913, 3404
BstPAI	GACNNNNGTC	1 cut(s)	1057
BstPI	GGTNACC	1 cut(s)	1385
BstSCI	CCNGG	8 cut(s)	281, 298, 437, 1088, 1513, 2437, 2730, 3228
BstSFI	CTRYAG	6 cut(s)	360, 1503, 1887, 2223, 2552, 3484
BstSLI	GKGCMC	1 cut(s)	235
BstV2I	GAAGAC	3 cut(s)	509, 2939, 3486
BstX2I	RGATCY	3 cut(s)	273, 2158, 2870
BstXI	CCANNNNNNTGG	3 cut(s)	1039, 1980, 3170
BstYI	RGATCY	3 cut(s)	273, 2158, 2870
Bsu15I	ATCGAT	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	3273
BsuRI	GGCC	6 cut(s)	197, 399, 1440, 2340, 2928, 3451
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	1343
BtgZI	GCGATG	2 cut(s)	528, 2874
BtsCI	GGATG	9 cut(s)	658, 1048, 1073, 1214, 1272, 1336, 2650, 3415, 3526
BtsI	GCAGTG	4 cut(s)	475, 2195, 2705, 2984
BveI	ACCTGC	1 cut(s)	2600
Cac8I	GCNNGC	3 cut(s)	457, 1923, 2911
CaiI	CAGNNNCTG	1 cut(s)	872
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	3 cut(s)	468, 2265, 2508
Cfr10I	RCCGGY	1 cut(s)	2327
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	4 cut(s)	30, 712, 828, 2728
CspCI	CAANNNNNGTGG	2 cut(s)	804, 839
CviQI	GTAC	4 cut(s)	30, 712, 828, 2728
DraI	TTTAAA	1 cut(s)	1743
DraIII	CACNNNGTG	2 cut(s)	703, 1792
EaeI	YGGCCR	4 cut(s)	397, 1438, 2338, 2926
Eam1104I	CTCTTC	4 cut(s)	283, 1225, 1249, 3592
EarI	CTCTTC	4 cut(s)	283, 1225, 1249, 3592
EciI	GGCGGA	2 cut(s)	1388, 3609
Ecl136II	GAGCTC	2 cut(s)	3082, 3198
Eco130I	CCWWGG	2 cut(s)	2407, 2787
Eco24I	GRGCYC	4 cut(s)	2738, 3084, 3200, 3501
Eco53kI	GAGCTC	2 cut(s)	3082, 3198
Eco57I	CTGAAG	5 cut(s)	254, 503, 1323, 3009, 3549
Eco91I	GGTNACC	1 cut(s)	1385
EcoICRI	GAGCTC	2 cut(s)	3082, 3198
EcoO65I	GGTNACC	1 cut(s)	1385
EcoRI	GAATTC	2 cut(s)	556, 1198
EcoRII	CCWGG	6 cut(s)	281, 298, 437, 1088, 1513, 3228
EcoT14I	CCWWGG	2 cut(s)	2407, 2787
EcoT22I	ATGCAT	2 cut(s)	1572, 2015
EcoT38I	GRGCYC	4 cut(s)	2738, 3084, 3200, 3501
ErhI	CCWWGG	2 cut(s)	2407, 2787
Esp3I	CGTCTC	1 cut(s)	3369
FalI	AAGNNNNNCTT	2 cut(s)	2938, 2970
FauI	CCCGC	2 cut(s)	343, 2683
FauNDI	CATATG	2 cut(s)	402, 2397
FbaI	TGATCA	1 cut(s)	3433
FblI	GTMKAC	1 cut(s)	3617
FokI	GGATG	9 cut(s)	665, 1055, 1060, 1201, 1259, 1343, 2657, 3422, 3533
FriOI	GRGCYC	4 cut(s)	2738, 3084, 3200, 3501
FspBI	CTAG	4 cut(s)	186, 1764, 1899, 3530
FspI	TGCGCA	2 cut(s)	467, 2507
GlaI	GCGC	3 cut(s)	467, 2264, 2507
GsuI	CTGGAG	4 cut(s)	1379, 1488, 1851, 3515
HaeIII	GGCC	6 cut(s)	197, 399, 1440, 2340, 2928, 3451
HapII	CCGG	5 cut(s)	2328, 2439, 2731, 2929, 3051
HhaI	GCGC	3 cut(s)	468, 2265, 2508
Hin6I	GCGC	3 cut(s)	466, 2263, 2506
HinP1I	GCGC	3 cut(s)	466, 2263, 2506
HincII	GTYRAC	4 cut(s)	694, 1294, 2209, 3618
HindII	GTYRAC	4 cut(s)	694, 1294, 2209, 3618
HindIII	AAGCTT	4 cut(s)	749, 968, 2796, 2967
HpaI	GTTAAC	1 cut(s)	1294
HpaII	CCGG	5 cut(s)	2328, 2439, 2731, 2929, 3051
HphI	GGTGA	7 cut(s)	652, 671, 1681, 2524, 2692, 3271, 3412
Hpy188I	TCNGA	9 cut(s)	204, 273, 1156, 1660, 1817, 2989, 3022, 3279, 3585
Hpy99I	CGWCG	2 cut(s)	2547, 3622
HpyAV	CCTTC	6 cut(s)	889, 1298, 2294, 2635, 2964, 3580
HpyCH4IV	ACGT	4 cut(s)	2170, 2344, 3182, 3620
HpySE526I	ACGT	4 cut(s)	2170, 2344, 3182, 3620
HspAI	GCGC	3 cut(s)	466, 2263, 2506
Ksp22I	TGATCA	1 cut(s)	3433
KspAI	GTTAAC	1 cut(s)	1294
LmnI	GCTCC	8 cut(s)	88, 285, 1500, 2741, 2768, 3079, 3203, 3496
LweI	GCATC	6 cut(s)	337, 493, 551, 643, 1082, 2357
MaeI	CTAG	4 cut(s)	186, 1764, 1899, 3530
MaeII	ACGT	4 cut(s)	2170, 2344, 3182, 3620
MfeI	CAATTG	2 cut(s)	1730, 2666
MflI	RGATCY	3 cut(s)	273, 2158, 2870
MhlI	GDGCHC	6 cut(s)	235, 1651, 2738, 3084, 3200, 3501
MlsI	TGGCCA	3 cut(s)	399, 1440, 2340
MluNI	TGGCCA	3 cut(s)	399, 1440, 2340
MlyI	GAGTC	5 cut(s)	34, 157, 1804, 2397, 2767
MmeI	TCCRAC	1 cut(s)	1056
Mox20I	TGGCCA	3 cut(s)	399, 1440, 2340
Mph1103I	ATGCAT	2 cut(s)	1572, 2015
MroXI	GAANNNNTTC	1 cut(s)	1853
MscI	TGGCCA	3 cut(s)	399, 1440, 2340
MslI	CAYNNNNRTG	1 cut(s)	2052
Msp20I	TGGCCA	3 cut(s)	399, 1440, 2340
MspA1I	CMGCKG	1 cut(s)	1121
MspCI	CTTAAG	1 cut(s)	2740
MspI	CCGG	5 cut(s)	2328, 2439, 2731, 2929, 3051
MspR9I	CCNGG	8 cut(s)	283, 300, 439, 1090, 1515, 2439, 2732, 3230
MunI	CAATTG	2 cut(s)	1730, 2666
Mva1269I	GAATGC	3 cut(s)	1124, 2461, 3565
MvaI	CCWGG	6 cut(s)	283, 300, 439, 1090, 1515, 3230
NciI	CCSGG	2 cut(s)	2439, 2732
NdeI	CATATG	2 cut(s)	402, 2397
NlaIV	GGNNCC	4 cut(s)	2160, 2737, 3049, 3498
NmuCI	GTSAC	6 cut(s)	377, 535, 1687, 2375, 2647, 3259
NsbI	TGCGCA	2 cut(s)	467, 2507
NsiI	ATGCAT	2 cut(s)	1572, 2015
NspI	RCATGY	4 cut(s)	215, 904, 2913, 3404
NspV	TTCGAA	2 cut(s)	629, 3118
PaeI	GCATGC	1 cut(s)	2913
PagI	TCATGA	1 cut(s)	343
PciI	ACATGT	1 cut(s)	3400
PcsI	WCGNNNNNNNCGW	1 cut(s)	3291
PctI	GAATGC	3 cut(s)	1124, 2461, 3565
PdmI	GAANNNNTTC	1 cut(s)	1853
PfeI	GAWTC	9 cut(s)	800, 1003, 1151, 1639, 2446, 2497, 2949, 3031, 3296
PflMI	CCANNNNNTGG	3 cut(s)	703, 3044, 3517
PfoI	TCCNGGA	2 cut(s)	281, 3228
PleI	GAGTC	5 cut(s)	33, 157, 1803, 2396, 2766
PpsI	GAGTC	5 cut(s)	33, 157, 1803, 2396, 2766
PscI	ACATGT	1 cut(s)	3400
PshAI	GACNNNNGTC	1 cut(s)	1057
PshBI	ATTAAT	2 cut(s)	384, 1422
PsiI	TTATAA	1 cut(s)	3546
Psp124BI	GAGCTC	2 cut(s)	3084, 3200
Psp6I	CCWGG	6 cut(s)	281, 298, 437, 1088, 1513, 3228
PspEI	GGTNACC	1 cut(s)	1385
PspGI	CCWGG	6 cut(s)	281, 298, 437, 1088, 1513, 3228
PspN4I	GGNNCC	4 cut(s)	2160, 2737, 3049, 3498
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	3 cut(s)	273, 2158, 2870
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	4 cut(s)	31, 713, 829, 2729
RsaNI	GTAC	4 cut(s)	30, 712, 828, 2728
RseI	CAYNNNNRTG	1 cut(s)	2052
SacI	GAGCTC	2 cut(s)	3084, 3200
SalI	GTCGAC	1 cut(s)	3616
SchI	GAGTC	5 cut(s)	34, 157, 1804, 2397, 2767
ScrFI	CCNGG	8 cut(s)	283, 300, 439, 1090, 1515, 2439, 2732, 3230
SduI	GDGCHC	6 cut(s)	235, 1651, 2738, 3084, 3200, 3501
SfaNI	GCATC	6 cut(s)	337, 493, 551, 643, 1082, 2357
SfcI	CTRYAG	6 cut(s)	360, 1503, 1887, 2223, 2552, 3484
SfuI	TTCGAA	2 cut(s)	629, 3118
SmiMI	CAYNNNNRTG	1 cut(s)	2052
SmlI	CTYRAG	4 cut(s)	677, 1013, 1113, 2740
SmoI	CTYRAG	4 cut(s)	677, 1013, 1113, 2740
SphI	GCATGC	1 cut(s)	2913
SsiI	CCGC	6 cut(s)	350, 1399, 1726, 2690, 3594, 3608
SspI	AATATT	3 cut(s)	685, 1588, 1664
SspMI	CTAG	4 cut(s)	186, 1764, 1899, 3530
SstI	GAGCTC	2 cut(s)	3084, 3200
StyD4I	CCNGG	8 cut(s)	281, 298, 437, 1088, 1513, 2437, 2730, 3228
StyI	CCWWGG	2 cut(s)	2407, 2787
TaiI	ACGT	4 cut(s)	2173, 2347, 3185, 3623
TaqI	TCGA	8 cut(s)	105, 423, 629, 2323, 3118, 3285, 3294, 3617
TaqII	GACCGA	1 cut(s)	468
TatI	WGTACW	1 cut(s)	827
TauI	GCSGC	1 cut(s)	1729
TfiI	GAWTC	9 cut(s)	800, 1003, 1151, 1639, 2446, 2497, 2949, 3031, 3296
TseFI	GTSAC	6 cut(s)	377, 535, 1687, 2375, 2647, 3259
Tsp45I	GTSAC	6 cut(s)	377, 535, 1687, 2375, 2647, 3259
TspGWI	ACGGA	2 cut(s)	1069, 1241
Van91I	CCANNNNNTGG	3 cut(s)	703, 3044, 3517
Vha464I	CTTAAG	1 cut(s)	2740
VneI	GTGCAC	1 cut(s)	231
VspI	ATTAAT	2 cut(s)	384, 1422
XapI	RAATTY	4 cut(s)	556, 1063, 1198, 2576
XbaI	TCTAGA	1 cut(s)	3529
XceI	RCATGY	4 cut(s)	215, 904, 2913, 3404
XcmI	CCANNNNNNNNNTGG	2 cut(s)	41, 3073
XmiI	GTMKAC	1 cut(s)	3617
XmnI	GAANNNNTTC	1 cut(s)	1853
XspI	CTAG	4 cut(s)	186, 1764, 1899, 3530
Zsp2I	ATGCAT	2 cut(s)	1572, 2015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.