Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

30565240 .. 30567260

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCACCACCTGGTTTCAGACCCACATGAGTTCAAATTGGGGCTTGCTCCTTCCTTTCCGGCCAAGCCTCTCGGAGTTTCGAGAACTCGATTTGAGTCGTTCCATAGGACTCATAAGGTCCCTGTGGGTGATACCCCCTACGTCAGAGCCAAGAATGTTCAGGAATTACTCGACTTGGGTGCGGCAGTTGGCACTCAAAGCCGAGGGCTTTCTGATGAGCTCATTAGCTTGCTTCCGACAACAAAATACAAGGGATGTACAAAAGAGGAGCTTGAAAAATCAAATTGCCCTGGAAGCATCGTTACCATAGTGAATGCATCAGCAAATGGCTCGGCACCAATATGGTTCATCAACACCTTAAAATCTAATATGCCTAGTCTGGAACGTTGGCTAGGACACACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

136

Amino Acids

14.79

Weight (kDa)

9.0

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	34, 275
AjnI	CCWGG	2 cut(s)	9, 289
AluBI	AGCT	3 cut(s)	220, 228, 271
AluI	AGCT	3 cut(s)	220, 228, 271
Alw21I	GWGCWC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
Bbv12I	GWGCWC	1 cut(s)	222
BcgI	CGANNNNNNTGC	4 cut(s)	161, 195, 312, 346
BciT130I	CCWGG	2 cut(s)	11, 291
BfaI	CTAG	2 cut(s)	375, 392
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	11, 291
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	120, 336
BmrFI	CCNGG	2 cut(s)	11, 291
BmsI	GCATC	2 cut(s)	306, 326
BsaJI	CCNNGG	2 cut(s)	202, 289
BseBI	CCWGG	2 cut(s)	11, 291
BseDI	CCNNGG	2 cut(s)	202, 289
BseGI	GGATG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	257
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	120, 336
BspT107I	GGYRCC	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	202, 289
Bst2UI	CCWGG	2 cut(s)	11, 291
BstAUI	TGTACA	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	45, 230
BstF5I	GGATG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 294
BstNI	CCWGG	2 cut(s)	11, 291
BstSCI	CCNGG	2 cut(s)	9, 289
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	45, 230
Cfr13I	GGNCC	1 cut(s)	118
CsiI	ACCWGGT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	9, 289
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	1 cut(s)	29
FaiI	YATR	6 cut(s)	27, 105, 114, 308, 343, 371
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	375, 392
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	2 cut(s)	95, 109
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	5 cut(s)	19, 74, 146, 214, 237
Hpy188III	TCNNGA	3 cut(s)	81, 161, 380
HpyAV	CCTTC	1 cut(s)	60
HpyCH4IV	ACGT	2 cut(s)	141, 385
HpyCH4V	TGCA	2 cut(s)	4, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 294
HpySE526I	ACGT	2 cut(s)	141, 385
Hsp92II	CATG	1 cut(s)	29
LmnI	GCTCC	2 cut(s)	52, 268
LpnPI	CCDG	7 cut(s)	23, 72, 135, 146, 276, 303, 365
LweI	GCATC	2 cut(s)	306, 326
MabI	ACCWGGT	1 cut(s)	9
MaeI	CTAG	2 cut(s)	375, 392
MaeII	ACGT	2 cut(s)	141, 385
MaeIII	GTNAC	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	35, 164, 283, 402
MlyI	GAGTC	2 cut(s)	103, 104
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	78, 197, 259
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	11, 291
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	11, 291
MwoI	GCNNNNNNNGC	2 cut(s)	198, 294
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	120, 336
NmeAIII	GCCGAG	2 cut(s)	227, 311
NsiI	ATGCAT	1 cut(s)	319
PctI	GAATGC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	103, 103
PpsI	GAGTC	2 cut(s)	103, 103
PpuMI	RGGWCCY	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	9, 289
PspGI	CCWGG	2 cut(s)	9, 289
PspN4I	GGNNCC	2 cut(s)	120, 336
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	103, 104
ScrFI	CCNGG	2 cut(s)	11, 291
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	12, 120, 144, 222, 230, 273, 359, 388
SexAI	ACCWGGT	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	306, 326
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	4 cut(s)	35, 164, 283, 402
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	375, 392
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	9, 289
TaiI	ACGT	2 cut(s)	144, 388
TaqI	TCGA	3 cut(s)	80, 88, 171
TasI	AATT	4 cut(s)	35, 164, 283, 402
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	118
XspI	CTAG	2 cut(s)	375, 392
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.