Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

20666582 .. 20675888

Gene Structure 9307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22530.17

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3741 bp

ATGAATAGGGCATCGCATATGAGGCAAGATCGTCCCAATCTGGGGCAAGATTTCTGCGCCCAGACGCCTTTTAAAGCTAATTTGTTGGAACATGTCAATGCACTTAATAATTTCTCGTGCCCACATAACATCCTGAGCTCAAATTTCATTTTCTCCTTACCAACACAAAAACCTCATGCCGAAGAGGCAATGGGTTCCGGCGCAATGGCTTGTCCAATTCAGAATACTGAAAGATTACAGAGTGCACAAGTTCAAAAGGCTTGGCATGCTCTTTCCAATCTTCAGATTTCTTGTAGGAACTACACAAAACCTGGAAAAACTCTTCTAGTTAAGGATGTTAATGCAGAGTGTCGTCGTGATGTTGGAACAACTTCTTTGCCAAGCTCATGCAACATTGATAAGAGTCGCGCACATATGCCAACGCATCAATACATGAATGGAACTAATACCAGGAACAGTGAAGCGGCAACTTGTTCGGGCAATCCGTTTCCGTCAAGTAATGTTAATGTTGCAGATGCAGGGAAAAATCTTGGACGGCAAAGTCAGTTCAGAGCATCAATGGTCAACAGTTCTGATGCTCGGGCGTCGGATTTATCTCTTGGCAACAATAGTGTTCATACCCGCCAAGGGAAAGACTCTGCAAAAGTTTTTGTTAATGACCTGGACGACGACGATGATGGCATTCTTGAGAATATTGATGTTGACCAGATAGTGGAACAGTACCAATCAAGTTGCACGCCTCAACCATCAATTTCCAAGCTTCCACCCATTGCTCCCTTTATAGATAAAGATAATATTGCAAGACAAGATGCTACTAGTTTGCCACCGGAATTGTGTTCAAATTGCAGTCATGGGTTTAAGATAGGACTTTGCCCAGAAGCTGCAAGTCATTTGCAGGAAATGAAGGATACCCTAATTATCATATCAAATGAACTGCTTGATGATGTTAATGACCTCAGTCCAGAACAAATAAATAAGCTTCGCCAAGATAGGTTACAGCTTAATAAGCAGATTCAGCAGCTTGAGAGATATCTTTGTAACAACTCATTGGACGAAGAAAGGCGAAAGTCACATTTTTCTGCATCAACAACTCCCAGGCCTTTCCAATGTGAAACACCTCAAGCAGCTGCATTCAGGACTGATCCCATGAGATTTGATTCACAGGTTCATCCACATAATGAGTCTGGAGGATATGACAGATGTAATTCATCATCAGTTTCATTCTCTTCTGTTGATAGGCTTGATTTCTCATCTTGTCCTGTTGAGAGGGAACCATACATTTCAAAGTTTGTTGAAGTTAACTACATTGAAGGTTCTAAGGACAAAAAATGGAGTAGTGATAATTTTCCATGGACCAAAAAGCTGGAGGATGGTAACAAGAAAGTGTTTGGAAATCACTCTTTCCGTCTCAACCAAAGAGAGGTCATTAATGCTACGATGAGTGGCTATGATGTTTTTGTTTTAATGCCAACTGGAGGGGGTAAGAGCTTGACATATCAGCTCCCTGCGCTAATTTGTCCAGGAATAACATTGGTTATTTCTCCCCTTGTATCACTTATTCAAGATCAAATAATGCATTTATTGCAGGCAAATGTTCCTGCTGCTTACCTAAGTGCCAATATGGAGTGGACTGAACAACAGGAAATACTTAGAGAACTAAATTATGAGTATTGTAAATACAAGCTGTTATATGTCACCCCAGAGAAAGTTGCTAAAAGTGATGCTCTTTTACGGCAGTTGGAGAATTTAAATGCTCGTCAATTGCTTTCTAGGATTGTTATTGATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGATTTCAGACCAGATTATCAGGCTCTTGGTATCTTGAAACAGAAGTTCCCAAATACTCCAGTTTTGGCTTTAACAGCTACTGCAACCGCTAGTGTAAAAGAAGATGTTGTGCAAGCTCTTGGTCTTGTTAACTGCATTGTTTTCCGGCAAAGTTTTAATCGTCCAAATTTACGGTATTCTGTTGTTCCCAAGACTAAGAAGTGTGTGGATGACATTGACAAGTTCATTAAAGAAAATCATTACGATGAAAGTGGAATAATTTATTGTCTCTCAAGAATGGACTGTGAAAAAGTTGCTGAAAGATTACAGGAATGTGGCCATAAAGCAGCATTTTACCATGGTAATATGGATCGAGCTCAGCGTGCCTTTGTCCAGAAGCAGTGGAGTAAAGATGAAATCAACGTTATATGTGCTACAGTGGCATTTGGAATGGGTACTTTAGTTTTGCTGATTTCTGCCTTCATTAATAAGGGACACCATTACCAATATTGGAATTGGAATTCAGGTATCAACAAGCCAGATGTCCGCTTTGTAATCCATCACTCTCTCCCGAAGTCTATTGAAGGCTACCATCAGGAGTGTGGTCGAGCTGGTAGAGATGGTCAGCATTCATCTTGTGTGTTGTATTACAGTTACAGTGACTATATTCGAGTAAAGCATATGATTAGTCAAGGAGTTATAGAGCAAAGCGCACTGACATCTGGATACAATCGTATCAATACTGCTAATTCTGGGAGAGTACTGGAAACGAATACCGAAAATCTTTTGCGCATGGTCAGTTATTGTGAAAATGGTGTTGATTGCCGACGACTTCTACAACTCATTCATTTTGGAGAAAACTTTGATTGTGCAACCTGCAAAAAGACGTGTGATAATTGTTTGAAGATTAAAAGTTTCAGTGAGAAGGATGTCACTGAAATCGCAAAGCAACTGGTTGAACTGGTGAAGTTAACAGGGCAGCAGTTTTCGTCATCTCATATTCTAGAAGTCTACAGGGGCTCCTTAAACCAATTTGTCAAGAAACACAGGCATCAGACTGTGAGACTGCATGGAGCAGGAAAACATCTAGCCAAGGGTGAAGCTTCTCGTGTATTACGTCATCTTGTTACCGAGGACCTTCTTGTTGAGGAAGTCAAGAAAAGTGATGTTTATGGATCTGTATCGTCAATACTAAAGGTTAATGAACAGAAAGCGCGCGAACTTTTCTCTGGCAGGAAGACAATTTTAATAAGATTCCCTTCCACATTAAAAGCTTCCAAACAGAAAAACCCCGAAGCGATTTCAGCTAAAGGCTCGCTGACATCTGGGATGCAGAGCCCTCCAATTACTGGCACTGAACAACCTCAATCAAAAGGAGATTTGGTTCTATACACGAAAATATTTTCTGCTTTGAAAATGCTTCGAACTAATATCATTAGAGAAGCTGGTGATGGTGTCATGGCACACCACATATTTCCGAATACAACGATTAAAAACATAAGCAGCAAAATGCCTAGAACGAAGGATGAACTCCTCGAGATAAATGGCATTACCCAAATTAAGGTGGCCAGGTACGGAGATCGAATACTTGAAACAATTGAAGCTGCCATAAAGGAATACTTCAAAACAGATAAAAACAGCAGCGGTAGCAATGACAGCAACGATATAAAGAGGAAAAGAGATGGTAACAAGGATCGGAAGGAAAGTTTTGAAGATGACGACTTCAGAAGCACAGATAGATCGAAGAAGAGGGCTCTAAAGACGCAGAGCAATACTATTGAGACCTTCCGTTATGTGGAGCCAGATTACAGTGAATTCATAGATGATGAATTAGACGTATCTGGTTATGACTTTGAAGCTAATGTTCCGGATATGAAAACCAATCAGAACGGTGGCGGAAGAGTGCTGCCACAGTGGTCAACTCCTGGAAATGGGCGACATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

1247

Amino Acids

140.25

Weight (kDa)

8.2

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	540
Acc16I	TGCGCA	1 cut(s)	2585
Acc36I	ACCTGC	1 cut(s)	2678
AccB7I	CCANNNNNTGG	2 cut(s)	712, 3143
AccI	GTMKAC	1 cut(s)	2805
AccII	CGCG	3 cut(s)	408, 3010, 3012
AccIII	TCCGGA	1 cut(s)	3661
AciI	CCGC	6 cut(s)	464, 622, 1902, 2341, 3438, 3690
AclI	AACGTT	1 cut(s)	2217
AclWI	GGATC	4 cut(s)	1136, 2172, 2977, 3495
AcoI	YGGCCR	2 cut(s)	2131, 3360
AcsI	RAATTY	5 cut(s)	142, 1744, 1981, 2314, 3608
AcuI	CTGAAG	2 cut(s)	266, 3502
AcyI	GRCGYC	2 cut(s)	65, 584
AfaI	GTAC	4 cut(s)	722, 2251, 2556, 3368
AflIII	ACRYGT	2 cut(s)	91, 2681
AhlI	ACTAGT	1 cut(s)	815
AjiI	CACGTC	1 cut(s)	2682
AjnI	CCWGG	7 cut(s)	310, 449, 660, 1094, 1519, 3362, 3718
AloI	GAACNNNNNNTCC	2 cut(s)	3162, 3194
Alw21I	GWGCWC	3 cut(s)	140, 247, 2173
Alw26I	GTCTC	4 cut(s)	1412, 2087, 2851, 3569
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	4 cut(s)	1136, 2172, 2977, 3495
AlwNI	CAGNNNCTG	2 cut(s)	881, 1895
Ama87I	CYCGRG	2 cut(s)	579, 3329
Aor13HI	TCCGGA	1 cut(s)	3661
AoxI	GGCC	3 cut(s)	1097, 2131, 3360
ApaLI	GTGCAC	1 cut(s)	243
ApoI	RAATTY	5 cut(s)	142, 1744, 1981, 2314, 3608
AseI	ATTAAT	2 cut(s)	1428, 2280
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	8 cut(s)	59, 203, 410, 1510, 2507, 2586, 3010, 3012
AspS9I	GGNCC	2 cut(s)	1353, 2929
AsuHPI	GGTGA	4 cut(s)	1687, 2770, 2903, 3254
AsuII	TTCGAA	1 cut(s)	3217
AvaI	CYCGRG	2 cut(s)	579, 3329
AvaII	GGWCC	2 cut(s)	1353, 2929
BaeGI	GKGCMC	2 cut(s)	122, 247
BaeI	ACNNNNGTAYC	6 cut(s)	2241, 2274, 2512, 2512, 2545, 2545
BalI	TGGCCA	2 cut(s)	2133, 3362
BanII	GRGCYC	5 cut(s)	140, 2173, 2816, 3134, 3550
BauI	CACGAG	2 cut(s)	115, 2901
BbsI	GAAGAC	1 cut(s)	3038
Bbv12I	GWGCWC	3 cut(s)	140, 247, 2173
BccI	CCATC	8 cut(s)	671, 754, 1364, 2361, 2394, 2408, 3239, 3470
BceAI	ACGGC	2 cut(s)	551, 1748
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
BciVI	GTATCC	2 cut(s)	901, 2513
BcoDI	GTCTC	4 cut(s)	1412, 2087, 2851, 3569
BcuI	ACTAGT	1 cut(s)	815
BfaI	CTAG	7 cut(s)	326, 816, 1770, 1905, 2798, 2882, 3309
BfmI	CTRYAG	2 cut(s)	2229, 2806
BfuAI	ACCTGC	1 cut(s)	2678
BfuI	GTATCC	2 cut(s)	901, 2513
BglI	GCCNNNNNGGC	1 cut(s)	185
BlpI	GCTNAGC	1 cut(s)	2172
BmcAI	AGTACT	1 cut(s)	2556
Bme1390I	CCNGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
Bme18I	GGWCC	2 cut(s)	1353, 2929
BmeT110I	CYCGRG	2 cut(s)	579, 3329
BmgBI	CACGTC	1 cut(s)	2682
BmgT120I	GGNCC	2 cut(s)	1353, 2929
BmiI	GGNNCC	4 cut(s)	196, 1272, 2815, 3594
BmrFI	CCNGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
BoxI	GACNNNNGTC	1 cut(s)	957
BpiI	GAAGAC	1 cut(s)	3038
BpmI	CTGGAG	4 cut(s)	1206, 1385, 1494, 1857
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	2172
Bpu14I	TTCGAA	1 cut(s)	3217
BpuEI	CTTGAG	4 cut(s)	707, 1043, 1104, 2071
BsaBI	GATNNNNATC	1 cut(s)	2974
BsaHI	GRCGYC	2 cut(s)	65, 584
BsaI	GGTCTC	1 cut(s)	3569
BsaJI	CCNNGG	6 cut(s)	625, 1094, 1349, 2152, 2886, 2925
BsaWI	WCCGGW	2 cut(s)	826, 3661
BsaXI	ACNNNNNCTCC	4 cut(s)	2798, 2828, 3162, 3192
Bse1I	ACTGG	6 cut(s)	1477, 1874, 2562, 2751, 2760, 3148
Bse3DI	GCAATG	4 cut(s)	195, 210, 768, 3451
Bse8I	GATNNNNATC	1 cut(s)	2974
BseAI	TCCGGA	1 cut(s)	3661
BseBI	CCWGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
BseDI	CCNNGG	6 cut(s)	625, 1094, 1349, 2152, 2886, 2925
BseGI	GGATG	8 cut(s)	129, 340, 1168, 1375, 2029, 2728, 3129, 3325
BseJI	GATNNNNATC	1 cut(s)	2974
BseMI	GCAATG	4 cut(s)	195, 210, 768, 3451
BseMII	CTCAG	3 cut(s)	125, 970, 2186
BseNI	ACTGG	6 cut(s)	1477, 1874, 2562, 2751, 2760, 3148
BsePI	GCGCGC	1 cut(s)	3008
BseRI	GAGGAG	1 cut(s)	3317
BseSI	GKGCMC	2 cut(s)	122, 247
Bsh1236I	CGCG	3 cut(s)	408, 3010, 3012
BshFI	GGCC	3 cut(s)	1099, 2133, 3362
BsiHKAI	GWGCWC	3 cut(s)	140, 247, 2173
BsiHKCI	CYCGRG	2 cut(s)	579, 3329
BsiSI	CCGG	4 cut(s)	198, 827, 1960, 3662
BslFI	GGGAC	2 cut(s)	18, 2301
BsmAI	GTCTC	4 cut(s)	1412, 2087, 2851, 3569
BsmBI	CGTCTC	1 cut(s)	1412
BsmFI	GGGAC	2 cut(s)	18, 2301
BsmI	GAATGC	3 cut(s)	681, 1130, 2422
BsnI	GGCC	3 cut(s)	1099, 2133, 3362
Bso31I	GGTCTC	1 cut(s)	3569
BsoBI	CYCGRG	2 cut(s)	579, 3329
Bsp119I	TTCGAA	1 cut(s)	3217
Bsp1286I	GDGCHC	7 cut(s)	122, 140, 247, 2173, 2816, 3134, 3550
Bsp13I	TCCGGA	1 cut(s)	3661
Bsp143I	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
Bsp1720I	GCTNAGC	1 cut(s)	2172
Bsp19I	CCATGG	2 cut(s)	1349, 2152
BspACI	CCGC	6 cut(s)	464, 622, 1902, 2341, 3438, 3690
BspANI	GGCC	3 cut(s)	1099, 2133, 3362
BspCNI	CTCAG	3 cut(s)	126, 969, 2185
BspEI	TCCGGA	1 cut(s)	3661
BspFNI	CGCG	3 cut(s)	408, 3010, 3012
BspLI	GGNNCC	4 cut(s)	196, 1272, 2815, 3594
BspMI	ACCTGC	1 cut(s)	2678
BspPI	GGATC	4 cut(s)	1136, 2172, 2977, 3495
BspT104I	TTCGAA	1 cut(s)	3217
BspTNI	GGTCTC	1 cut(s)	3569
BsrDI	GCAATG	4 cut(s)	195, 210, 768, 3451
BsrI	ACTGG	6 cut(s)	1477, 1874, 2562, 2751, 2760, 3148
BssECI	CCNNGG	6 cut(s)	625, 1094, 1349, 2152, 2886, 2925
BssHII	GCGCGC	1 cut(s)	3008
BssMI	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
BssNI	GRCGYC	2 cut(s)	65, 584
BssSI	CACGAG	2 cut(s)	115, 2901
BssT1I	CCWWGG	4 cut(s)	625, 1349, 2152, 2886
Bst2BI	CACGAG	2 cut(s)	115, 2901
Bst2UI	CCWGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
Bst6I	CTCTTC	5 cut(s)	177, 327, 1231, 3536, 3688
BstACI	GRCGYC	2 cut(s)	65, 584
BstAPI	GCANNNNNTGC	1 cut(s)	1582
BstBI	TTCGAA	1 cut(s)	3217
BstC8I	GCNNGC	7 cut(s)	267, 737, 1587, 1929, 2178, 3010, 3110
BstDEI	CTNAG	7 cut(s)	134, 956, 1317, 1610, 1649, 2010, 2172
BstDSI	CCRYGG	2 cut(s)	1349, 2152
BstF5I	GGATG	8 cut(s)	129, 340, 1168, 1375, 2029, 2728, 3129, 3325
BstFNI	CGCG	3 cut(s)	408, 3010, 3012
BstHHI	GCGC	8 cut(s)	59, 203, 410, 1510, 2507, 2586, 3010, 3012
BstKTI	GATC	8 cut(s)	31, 1144, 1567, 2167, 2972, 3376, 3490, 3536
BstMAI	GTCTC	4 cut(s)	1412, 2087, 2851, 3569
BstMBI	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
BstNI	CCWGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
BstNSI	RCATGY	2 cut(s)	95, 269
BstPAI	GACNNNNGTC	1 cut(s)	957
BstSCI	CCNGG	7 cut(s)	310, 449, 660, 1094, 1519, 3362, 3718
BstSFI	CTRYAG	2 cut(s)	2229, 2806
BstSLI	GKGCMC	2 cut(s)	122, 247
BstUI	CGCG	3 cut(s)	408, 3010, 3012
BstV2I	GAAGAC	1 cut(s)	3038
BstX2I	RGATCY	1 cut(s)	2969
BstXI	CCANNNNNNTGG	1 cut(s)	1363
BstYI	RGATCY	1 cut(s)	2969
BsuI	GTATCC	2 cut(s)	901, 2513
BsuRI	GGCC	3 cut(s)	1099, 2133, 3362
BtgI	CCRYGG	2 cut(s)	1349, 2152
BtrI	CACGTC	1 cut(s)	2682
BtsCI	GGATG	8 cut(s)	129, 340, 1168, 1375, 2029, 2728, 3129, 3325
BtsI	GCAGTG	1 cut(s)	2201
BveI	ACCTGC	1 cut(s)	2678
Cac8I	GCNNGC	7 cut(s)	267, 737, 1587, 1929, 2178, 3010, 3110
CaiI	CAGNNNCTG	2 cut(s)	881, 1895
CfoI	GCGC	8 cut(s)	59, 203, 410, 1510, 2507, 2586, 3010, 3012
Cfr13I	GGNCC	2 cut(s)	1353, 2929
CseI	GACGC	3 cut(s)	73, 573, 3565
Csp6I	GTAC	4 cut(s)	721, 2250, 2555, 3367
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviQI	GTAC	4 cut(s)	721, 2250, 2555, 3367
DdeI	CTNAG	7 cut(s)	134, 956, 1317, 1610, 1649, 2010, 2172
DpnI	GATC	8 cut(s)	30, 1143, 1566, 2166, 2971, 3375, 3489, 3535
DpnII	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
DraI	TTTAAA	2 cut(s)	73, 1749
DrdI	GACNNNNNNGTC	1 cut(s)	540
DseDI	GACNNNNNNGTC	1 cut(s)	540
EaeI	YGGCCR	2 cut(s)	2131, 3360
Eam1104I	CTCTTC	5 cut(s)	177, 327, 1231, 3536, 3688
EarI	CTCTTC	5 cut(s)	177, 327, 1231, 3536, 3688
EciI	GGCGGA	1 cut(s)	3705
Ecl136II	GAGCTC	2 cut(s)	138, 2171
Eco130I	CCWWGG	4 cut(s)	625, 1349, 2152, 2886
Eco147I	AGGCCT	1 cut(s)	1099
Eco24I	GRGCYC	5 cut(s)	140, 2173, 2816, 3134, 3550
Eco31I	GGTCTC	1 cut(s)	3569
Eco32I	GATATC	1 cut(s)	1031
Eco47I	GGWCC	2 cut(s)	1353, 2929
Eco53kI	GAGCTC	2 cut(s)	138, 2171
Eco57I	CTGAAG	2 cut(s)	266, 3502
Eco88I	CYCGRG	2 cut(s)	579, 3329
EcoICRI	GAGCTC	2 cut(s)	138, 2171
EcoO109I	RGGNCCY	1 cut(s)	2929
EcoRI	GAATTC	2 cut(s)	2314, 3608
EcoRII	CCWGG	7 cut(s)	310, 449, 660, 1094, 1519, 3362, 3718
EcoRV	GATATC	1 cut(s)	1031
EcoT14I	CCWWGG	4 cut(s)	625, 1349, 2152, 2886
EcoT22I	ATGCAT	1 cut(s)	1578
EcoT38I	GRGCYC	5 cut(s)	140, 2173, 2816, 3134, 3550
ErhI	CCWWGG	4 cut(s)	625, 1349, 2152, 2886
Esp3I	CGTCTC	1 cut(s)	1412
FalI	AAGNNNNNCTT	4 cut(s)	3037, 3069, 3398, 3430
FaqI	GGGAC	2 cut(s)	18, 2301
FauI	CCCGC	1 cut(s)	629
FauNDI	CATATG	3 cut(s)	18, 414, 2475
FblI	GTMKAC	1 cut(s)	2805
FokI	GGATG	8 cut(s)	116, 347, 1155, 1382, 2036, 2735, 3136, 3332
FriOI	GRGCYC	5 cut(s)	140, 2173, 2816, 3134, 3550
FspBI	CTAG	7 cut(s)	326, 816, 1770, 1905, 2798, 2882, 3309
FspI	TGCGCA	1 cut(s)	2585
GlaI	GCGC	8 cut(s)	58, 202, 409, 1509, 2506, 2585, 3009, 3011
GsuI	CTGGAG	4 cut(s)	1206, 1385, 1494, 1857
HaeIII	GGCC	3 cut(s)	1099, 2133, 3362
HapII	CCGG	4 cut(s)	198, 827, 1960, 3662
HgaI	GACGC	3 cut(s)	73, 573, 3565
HhaI	GCGC	8 cut(s)	59, 203, 410, 1510, 2507, 2586, 3010, 3012
Hin1I	GRCGYC	2 cut(s)	65, 584
Hin6I	GCGC	8 cut(s)	57, 201, 408, 1508, 2505, 2584, 3008, 3010
HinP1I	GCGC	8 cut(s)	57, 201, 408, 1508, 2505, 2584, 3008, 3010
HincII	GTYRAC	6 cut(s)	565, 703, 1300, 1945, 2766, 3714
HindII	GTYRAC	6 cut(s)	565, 703, 1300, 1945, 2766, 3714
HindIII	AAGCTT	4 cut(s)	758, 977, 2895, 3066
HinfI	GANTC	7 cut(s)	403, 635, 1012, 1157, 1181, 1801, 3048
HpaI	GTTAAC	3 cut(s)	1300, 1945, 2766
HpaII	CCGG	4 cut(s)	198, 827, 1960, 3662
HphI	GGTGA	4 cut(s)	1687, 2770, 2903, 3254
Hpy166II	GTNNAC	9 cut(s)	245, 565, 703, 1300, 1629, 1945, 2766, 2806, 3714
Hpy8I	GTNNAC	9 cut(s)	245, 565, 703, 1300, 1629, 1945, 2766, 2806, 3714
Hpy99I	CGWCG	5 cut(s)	357, 589, 671, 674, 2625
HpyCH4IV	ACGT	4 cut(s)	2217, 2681, 2911, 3630
HpyF3I	CTNAG	7 cut(s)	134, 956, 1317, 1610, 1649, 2010, 2172
HpySE526I	ACGT	4 cut(s)	2217, 2681, 2911, 3630
Hsp92I	GRCGYC	2 cut(s)	65, 584
HspAI	GCGC	8 cut(s)	57, 201, 408, 1508, 2505, 2584, 3008, 3010
Kpn2I	TCCGGA	1 cut(s)	3661
KspAI	GTTAAC	3 cut(s)	1300, 1945, 2766
Kzo9I	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
LmnI	GCTCC	5 cut(s)	778, 1506, 2819, 2867, 3592
MaeI	CTAG	7 cut(s)	326, 816, 1770, 1905, 2798, 2882, 3309
MaeII	ACGT	4 cut(s)	2217, 2681, 2911, 3630
MalI	GATC	8 cut(s)	30, 1143, 1566, 2166, 2971, 3375, 3489, 3535
MboI	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
MfeI	CAATTG	2 cut(s)	1760, 3390
MflI	RGATCY	1 cut(s)	2969
MhlI	GDGCHC	7 cut(s)	122, 140, 247, 2173, 2816, 3134, 3550
MlsI	TGGCCA	2 cut(s)	2133, 3362
MluNI	TGGCCA	2 cut(s)	2133, 3362
MlyI	GAGTC	4 cut(s)	412, 629, 1190, 1810
MmeI	TCCRAC	4 cut(s)	66, 343, 567, 1719
Mox20I	TGGCCA	2 cut(s)	2133, 3362
Mph1103I	ATGCAT	1 cut(s)	1578
MroI	TCCGGA	1 cut(s)	3661
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	2 cut(s)	2133, 3362
MslI	CAYNNNNRTG	2 cut(s)	96, 2058
Msp20I	TGGCCA	2 cut(s)	2133, 3362
MspA1I	CMGCKG	2 cut(s)	1127, 3438
MspI	CCGG	4 cut(s)	198, 827, 1960, 3662
MspR9I	CCNGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
MunI	CAATTG	2 cut(s)	1760, 3390
Mva1269I	GAATGC	3 cut(s)	681, 1130, 2422
MvaI	CCWGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
MvnI	CGCG	3 cut(s)	408, 3010, 3012
NcoI	CCATGG	2 cut(s)	1349, 2152
NdeI	CATATG	3 cut(s)	18, 414, 2475
NdeII	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
NlaIV	GGNNCC	4 cut(s)	196, 1272, 2815, 3594
NmuCI	GTSAC	4 cut(s)	1068, 1693, 2453, 2725
NsbI	TGCGCA	1 cut(s)	2585
NsiI	ATGCAT	1 cut(s)	1578
NspI	RCATGY	2 cut(s)	95, 269
NspV	TTCGAA	1 cut(s)	3217
PaeI	GCATGC	1 cut(s)	269
PaeR7I	CTCGAG	1 cut(s)	3329
PauI	GCGCGC	1 cut(s)	3008
PceI	AGGCCT	1 cut(s)	1099
PciI	ACATGT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	3 cut(s)	482, 2173, 2908
PctI	GAATGC	3 cut(s)	681, 1130, 2422
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	1012, 1157, 3048
PflMI	CCANNNNNTGG	2 cut(s)	712, 3143
PfoI	TCCNGGA	2 cut(s)	1519, 3718
PleI	GAGTC	4 cut(s)	411, 629, 1189, 1809
PpsI	GAGTC	4 cut(s)	411, 629, 1189, 1809
PpuMI	RGGWCCY	1 cut(s)	2929
PscI	ACATGT	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	957
PshBI	ATTAAT	2 cut(s)	1428, 2280
Psp124BI	GAGCTC	2 cut(s)	140, 2173
Psp1406I	AACGTT	1 cut(s)	2217
Psp5II	RGGWCCY	1 cut(s)	2929
Psp6I	CCWGG	7 cut(s)	310, 449, 660, 1094, 1519, 3362, 3718
PspGI	CCWGG	7 cut(s)	310, 449, 660, 1094, 1519, 3362, 3718
PspN4I	GGNNCC	4 cut(s)	196, 1272, 2815, 3594
PspPI	GGNCC	2 cut(s)	1353, 2929
PspPPI	RGGWCCY	1 cut(s)	2929
PstNI	CAGNNNCTG	2 cut(s)	881, 1895
PsuI	RGATCY	1 cut(s)	2969
PteI	GCGCGC	1 cut(s)	3008
PvuII	CAGCTG	1 cut(s)	1127
RsaI	GTAC	4 cut(s)	722, 2251, 2556, 3368
RsaNI	GTAC	4 cut(s)	721, 2250, 2555, 3367
RseI	CAYNNNNRTG	2 cut(s)	96, 2058
SacI	GAGCTC	2 cut(s)	140, 2173
Sau3AI	GATC	8 cut(s)	28, 1141, 1564, 2164, 2969, 3373, 3487, 3533
Sau96I	GGNCC	2 cut(s)	1353, 2929
ScaI	AGTACT	1 cut(s)	2556
SchI	GAGTC	4 cut(s)	412, 629, 1190, 1810
ScrFI	CCNGG	7 cut(s)	312, 451, 662, 1096, 1521, 3364, 3720
SduI	GDGCHC	7 cut(s)	122, 140, 247, 2173, 2816, 3134, 3550
SfcI	CTRYAG	2 cut(s)	2229, 2806
Sfr274I	CTCGAG	1 cut(s)	3329
SfuI	TTCGAA	1 cut(s)	3217
SinI	GGWCC	2 cut(s)	1353, 2929
SlaI	CTCGAG	1 cut(s)	3329
SmiI	ATTTAAAT	1 cut(s)	1749
SmiMI	CAYNNNNRTG	2 cut(s)	96, 2058
SmlI	CTYRAG	5 cut(s)	686, 1022, 1119, 2086, 3329
SmoI	CTYRAG	5 cut(s)	686, 1022, 1119, 2086, 3329
SpeI	ACTAGT	1 cut(s)	815
SphI	GCATGC	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	1099
SsiI	CCGC	6 cut(s)	464, 622, 1902, 2341, 3438, 3690
SspI	AATATT	4 cut(s)	694, 796, 2303, 3195
SspMI	CTAG	7 cut(s)	326, 816, 1770, 1905, 2798, 2882, 3309
SstI	GAGCTC	2 cut(s)	140, 2173
StuI	AGGCCT	1 cut(s)	1099
StyD4I	CCNGG	7 cut(s)	310, 449, 660, 1094, 1519, 3362, 3718
StyI	CCWWGG	4 cut(s)	625, 1349, 2152, 2886
SwaI	ATTTAAAT	1 cut(s)	1749
TaiI	ACGT	4 cut(s)	2220, 2684, 2914, 3633
TaqI	TCGA	7 cut(s)	2167, 2401, 2464, 3217, 3330, 3376, 3536
TatI	WGTACW	1 cut(s)	2554
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	3 cut(s)	1012, 1157, 3048
TseFI	GTSAC	4 cut(s)	1068, 1693, 2453, 2725
Tsp45I	GTSAC	4 cut(s)	1068, 1693, 2453, 2725
TspGWI	ACGGA	5 cut(s)	474, 480, 1394, 3384, 3572
Van91I	CCANNNNNTGG	2 cut(s)	712, 3143
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	1353, 2929
VspI	ATTAAT	2 cut(s)	1428, 2280
XapI	RAATTY	5 cut(s)	142, 1744, 1981, 2314, 3608
XbaI	TCTAGA	1 cut(s)	2797
XceI	RCATGY	2 cut(s)	95, 269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2393
XhoI	CTCGAG	1 cut(s)	3329
XmiI	GTMKAC	1 cut(s)	2805
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	7 cut(s)	326, 816, 1770, 1905, 2798, 2882, 3309
ZrmI	AGTACT	1 cut(s)	2556
Zsp2I	ATGCAT	1 cut(s)	1578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.