ATP-dependent DNA helicase Q-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 390 - 557 | 1.7e-25 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 594 - 701 | 8.5e-20 | Helicase conserved C-terminal domain |
| RecQ_Zn_bind | PF16124 | 712 - 794 | 4.9e-15 | RecQ zinc-binding |
| RQC | PF09382 | 801 - 917 | 3.6e-20 | RQC domain |
| HRDC | PF00570 | 959 - 1026 | 2.5e-11 | HRDC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3330 |
| Acc16I | TGCGCA | 2 cut(s) | 230, 2270 |
| Acc36I | ACCTGC | 1 cut(s) | 2363 |
| AccB1I | GGYRCC | 1 cut(s) | 2831 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 466, 2828, 3301 |
| AccI | GTMKAC | 1 cut(s) | 3401 |
| AciI | CCGC | 5 cut(s) | 113, 1162, 1489, 2453, 3392 |
| AclWI | GGATC | 3 cut(s) | 1916, 1929, 2662 |
| AcoI | YGGCCR | 4 cut(s) | 160, 1201, 2101, 2710 |
| AcsI | RAATTY | 4 cut(s) | 8, 826, 961, 2339 |
| AcuI | CTGAAG | 5 cut(s) | 26, 266, 1086, 2793, 3333 |
| AdeI | CACNNNGTG | 1 cut(s) | 466 |
| AfaI | GTAC | 3 cut(s) | 476, 592, 2492 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 466, 1177, 1232, 2828, 3301 |
| AflII | CTTAAG | 1 cut(s) | 2503 |
| AflIII | ACRYGT | 1 cut(s) | 3184 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2541 |
| AjnI | CCWGG | 5 cut(s) | 70, 200, 851, 1276, 3012 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 66, 98, 1020, 1052, 1081, 1113 |
| Alw21I | GWGCWC | 3 cut(s) | 1414, 2868, 2984 |
| Alw26I | GTCTC | 1 cut(s) | 3153 |
| AlwI | GGATC | 3 cut(s) | 1916, 1929, 2662 |
| AoxI | GGCC | 5 cut(s) | 160, 1201, 2101, 2710, 3233 |
| ApeKI | GCWGC | 9 cut(s) | 215, 751, 881, 884, 1358, 1898, 2222, 2458, 3120 |
| ApoI | RAATTY | 4 cut(s) | 8, 826, 961, 2339 |
| AseI | ATTAAT | 2 cut(s) | 147, 1185 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1616 |
| AspLEI | GCGC | 3 cut(s) | 231, 2028, 2271 |
| AsuC2I | CCSGG | 2 cut(s) | 2202, 2495 |
| AsuHPI | GGTGA | 8 cut(s) | 325, 415, 434, 1444, 2287, 2455, 3055, 3196 |
| AsuII | TTCGAA | 2 cut(s) | 392, 2902 |
| BaeGI | GKGCMC | 1 cut(s) | 1375 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1617, 1650 |
| BalI | TGGCCA | 3 cut(s) | 162, 1203, 2103 |
| BamHI | GGATCC | 1 cut(s) | 1921 |
| BanI | GGYRCC | 1 cut(s) | 2831 |
| BanII | GRGCYC | 4 cut(s) | 2501, 2868, 2984, 3285 |
| BbsI | GAAGAC | 3 cut(s) | 272, 2723, 3270 |
| Bbv12I | GWGCWC | 3 cut(s) | 1414, 2868, 2984 |
| BbvI | GCAGC | 9 cut(s) | 202, 763, 871, 893, 1345, 1910, 2234, 2470, 3132 |
| BccI | CCATC | 8 cut(s) | 406, 508, 538, 1088, 2093, 2607, 3083, 3095 |
| BceAI | ACGGC | 2 cut(s) | 2324, 3220 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 556, 590 |
| BciT130I | CCWGG | 5 cut(s) | 72, 202, 853, 1278, 3014 |
| BciVI | GTATCC | 1 cut(s) | 3057 |
| BclI | TGATCA | 1 cut(s) | 3217 |
| BcnI | CCSGG | 2 cut(s) | 2202, 2495 |
| BcoDI | GTCTC | 1 cut(s) | 3153 |
| BfaI | CTAG | 4 cut(s) | 54, 1527, 1662, 3314 |
| BfmI | CTRYAG | 6 cut(s) | 123, 1266, 1650, 1986, 2315, 3268 |
| BfrI | CTTAAG | 1 cut(s) | 2503 |
| BfuAI | ACCTGC | 1 cut(s) | 2363 |
| BfuI | GTATCC | 1 cut(s) | 3057 |
| BglII | AGATCT | 1 cut(s) | 45 |
| Bme1390I | CCNGG | 7 cut(s) | 72, 202, 853, 1278, 2202, 2495, 3014 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2541 |
| BmiI | GGNNCC | 4 cut(s) | 1923, 2500, 2833, 3282 |
| BmrFI | CCNGG | 7 cut(s) | 72, 202, 853, 1278, 2202, 2495, 3014 |
| BmsI | GCATC | 6 cut(s) | 100, 256, 314, 845, 2120, 2539 |
| BoxI | GACNNNNGTC | 1 cut(s) | 820 |
| BpiI | GAAGAC | 3 cut(s) | 272, 2723, 3270 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2174, 2206 |
| BpmI | CTGGAG | 4 cut(s) | 1142, 1251, 1614, 3299 |
| Bpu14I | TTCGAA | 2 cut(s) | 392, 2902 |
| BpuEI | CTTGAG | 3 cut(s) | 461, 797, 861 |
| BpuMI | CCSGG | 2 cut(s) | 2202, 2495 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2659, 3309 |
| BsaJI | CCNNGG | 5 cut(s) | 851, 1106, 2170, 2494, 2571 |
| BsaWI | WCCGGW | 2 cut(s) | 580, 2834 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 832, 862, 1081, 1111, 2483, 2513 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 466, 1177, 1232, 2828, 3301 |
| Bse118I | RCCGGY | 1 cut(s) | 2090 |
| Bse1I | ACTGG | 5 cut(s) | 1125, 1234, 1631, 2247, 2445 |
| Bse3DI | GCAATG | 3 cut(s) | 202, 3136, 3401 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2659, 3309 |
| BseBI | CCWGG | 5 cut(s) | 72, 202, 853, 1278, 3014 |
| BseDI | CCNNGG | 5 cut(s) | 851, 1106, 2170, 2494, 2571 |
| BseJI | GATNNNNATC | 2 cut(s) | 2659, 3309 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 466, 1177, 1232, 2828, 3301 |
| BseMI | GCAATG | 3 cut(s) | 202, 3136, 3401 |
| BseMII | CTCAG | 6 cut(s) | 344, 724, 1406, 2247, 2796, 2858 |
| BseNI | ACTGG | 5 cut(s) | 1125, 1234, 1631, 2247, 2445 |
| BseSI | GKGCMC | 1 cut(s) | 1375 |
| BseXI | GCAGC | 9 cut(s) | 202, 763, 871, 893, 1345, 1910, 2234, 2470, 3132 |
| BshFI | GGCC | 5 cut(s) | 162, 1203, 2103, 2712, 3235 |
| BshNI | GGYRCC | 1 cut(s) | 2831 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1414, 2868, 2984 |
| BsiSI | CCGG | 6 cut(s) | 581, 2091, 2202, 2494, 2713, 2835 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 466, 1177, 1232, 2828, 3301 |
| BsmAI | GTCTC | 1 cut(s) | 3153 |
| BsmBI | CGTCTC | 1 cut(s) | 3153 |
| BsmI | GAATGC | 3 cut(s) | 887, 2224, 3349 |
| BsnI | GGCC | 5 cut(s) | 162, 1203, 2103, 2712, 3235 |
| Bsp119I | TTCGAA | 2 cut(s) | 392, 2902 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1375, 1414, 2501, 2868, 2984, 3285 |
| Bsp1407I | TGTACA | 1 cut(s) | 590 |
| BspACI | CCGC | 5 cut(s) | 113, 1162, 1489, 2453, 3392 |
| BspANI | GGCC | 5 cut(s) | 162, 1203, 2103, 2712, 3235 |
| BspCNI | CTCAG | 6 cut(s) | 343, 723, 1407, 2248, 2797, 2857 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 4 cut(s) | 1923, 2500, 2833, 3282 |
| BspMI | ACCTGC | 1 cut(s) | 2363 |
| BspPI | GGATC | 3 cut(s) | 1916, 1929, 2662 |
| BspT104I | TTCGAA | 2 cut(s) | 392, 2902 |
| BspT107I | GGYRCC | 1 cut(s) | 2831 |
| BspTI | CTTAAG | 1 cut(s) | 2503 |
| BsrDI | GCAATG | 3 cut(s) | 202, 3136, 3401 |
| BsrFI | RCCGGY | 1 cut(s) | 2090 |
| BsrGI | TGTACA | 1 cut(s) | 590 |
| BsrI | ACTGG | 5 cut(s) | 1125, 1234, 1631, 2247, 2445 |
| BssAI | RCCGGY | 1 cut(s) | 2090 |
| BssECI | CCNNGG | 5 cut(s) | 851, 1106, 2170, 2494, 2571 |
| BssT1I | CCWWGG | 2 cut(s) | 2170, 2571 |
| Bst2UI | CCWGG | 5 cut(s) | 72, 202, 853, 1278, 3014 |
| Bst6I | CTCTTC | 4 cut(s) | 55, 988, 1012, 3376 |
| BstAFI | CTTAAG | 1 cut(s) | 2503 |
| BstAUI | TGTACA | 1 cut(s) | 590 |
| BstBI | TTCGAA | 2 cut(s) | 392, 2902 |
| BstC8I | GCNNGC | 5 cut(s) | 18, 27, 220, 1686, 2695 |
| BstDSI | CCRYGG | 1 cut(s) | 1106 |
| BstEII | GGTNACC | 1 cut(s) | 1148 |
| BstHHI | GCGC | 3 cut(s) | 231, 2028, 2271 |
| BstMAI | GTCTC | 1 cut(s) | 3153 |
| BstNI | CCWGG | 5 cut(s) | 72, 202, 853, 1278, 3014 |
| BstNSI | RCATGY | 4 cut(s) | 29, 667, 2697, 3188 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 820 |
| BstPI | GGTNACC | 1 cut(s) | 1148 |
| BstSCI | CCNGG | 7 cut(s) | 70, 200, 851, 1276, 2200, 2493, 3012 |
| BstSFI | CTRYAG | 6 cut(s) | 123, 1266, 1650, 1986, 2315, 3268 |
| BstSLI | GKGCMC | 1 cut(s) | 1375 |
| BstV1I | GCAGC | 9 cut(s) | 202, 763, 871, 893, 1345, 1910, 2234, 2470, 3132 |
| BstV2I | GAAGAC | 3 cut(s) | 272, 2723, 3270 |
| BstX2I | RGATCY | 3 cut(s) | 45, 1921, 2654 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 802, 1743, 2954 |
| BstYI | RGATCY | 3 cut(s) | 45, 1921, 2654 |
| BsuI | GTATCC | 1 cut(s) | 3057 |
| BsuRI | GGCC | 5 cut(s) | 162, 1203, 2103, 2712, 3235 |
| BtgI | CCRYGG | 1 cut(s) | 1106 |
| BtgZI | GCGATG | 2 cut(s) | 291, 2658 |
| BtsI | GCAGTG | 4 cut(s) | 238, 1958, 2468, 2768 |
| BveI | ACCTGC | 1 cut(s) | 2363 |
| Cac8I | GCNNGC | 5 cut(s) | 18, 27, 220, 1686, 2695 |
| CciI | TCATGA | 1 cut(s) | 106 |
| CfoI | GCGC | 3 cut(s) | 231, 2028, 2271 |
| Cfr10I | RCCGGY | 1 cut(s) | 2090 |
| CseI | GACGC | 1 cut(s) | 3412 |
| Csp6I | GTAC | 3 cut(s) | 475, 591, 2491 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 567, 602 |
| CviQI | GTAC | 3 cut(s) | 475, 591, 2491 |
| DraI | TTTAAA | 1 cut(s) | 1506 |
| DraIII | CACNNNGTG | 1 cut(s) | 466 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2541 |
| EaeI | YGGCCR | 4 cut(s) | 160, 1201, 2101, 2710 |
| Eam1104I | CTCTTC | 4 cut(s) | 55, 988, 1012, 3376 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2541 |
| EarI | CTCTTC | 4 cut(s) | 55, 988, 1012, 3376 |
| EciI | GGCGGA | 1 cut(s) | 1151 |
| Ecl136II | GAGCTC | 2 cut(s) | 2866, 2982 |
| Eco130I | CCWWGG | 2 cut(s) | 2170, 2571 |
| Eco24I | GRGCYC | 4 cut(s) | 2501, 2868, 2984, 3285 |
| Eco53kI | GAGCTC | 2 cut(s) | 2866, 2982 |
| Eco57I | CTGAAG | 5 cut(s) | 26, 266, 1086, 2793, 3333 |
| Eco91I | GGTNACC | 1 cut(s) | 1148 |
| EcoICRI | GAGCTC | 2 cut(s) | 2866, 2982 |
| EcoO65I | GGTNACC | 1 cut(s) | 1148 |
| EcoRI | GAATTC | 1 cut(s) | 961 |
| EcoRII | CCWGG | 5 cut(s) | 70, 200, 851, 1276, 3012 |
| EcoT14I | CCWWGG | 2 cut(s) | 2170, 2571 |
| EcoT22I | ATGCAT | 2 cut(s) | 1335, 1778 |
| EcoT38I | GRGCYC | 4 cut(s) | 2501, 2868, 2984, 3285 |
| ErhI | CCWWGG | 2 cut(s) | 2170, 2571 |
| Esp3I | CGTCTC | 1 cut(s) | 3153 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2722, 2754 |
| FauI | CCCGC | 2 cut(s) | 106, 2446 |
| FauNDI | CATATG | 3 cut(s) | 165, 1377, 2160 |
| FbaI | TGATCA | 1 cut(s) | 3217 |
| FblI | GTMKAC | 1 cut(s) | 3401 |
| FriOI | GRGCYC | 4 cut(s) | 2501, 2868, 2984, 3285 |
| FspBI | CTAG | 4 cut(s) | 54, 1527, 1662, 3314 |
| FspI | TGCGCA | 2 cut(s) | 230, 2270 |
| GlaI | GCGC | 3 cut(s) | 230, 2027, 2270 |
| GsuI | CTGGAG | 4 cut(s) | 1142, 1251, 1614, 3299 |
| HaeIII | GGCC | 5 cut(s) | 162, 1203, 2103, 2712, 3235 |
| HapII | CCGG | 6 cut(s) | 581, 2091, 2202, 2494, 2713, 2835 |
| HgaI | GACGC | 1 cut(s) | 3412 |
| HhaI | GCGC | 3 cut(s) | 231, 2028, 2271 |
| Hin6I | GCGC | 3 cut(s) | 229, 2026, 2269 |
| HinP1I | GCGC | 3 cut(s) | 229, 2026, 2269 |
| HincII | GTYRAC | 4 cut(s) | 457, 1057, 1972, 3402 |
| HindII | GTYRAC | 4 cut(s) | 457, 1057, 1972, 3402 |
| HindIII | AAGCTT | 4 cut(s) | 512, 731, 2580, 2751 |
| HpaI | GTTAAC | 1 cut(s) | 1057 |
| HpaII | CCGG | 6 cut(s) | 581, 2091, 2202, 2494, 2713, 2835 |
| HphI | GGTGA | 8 cut(s) | 325, 415, 434, 1444, 2287, 2455, 3055, 3196 |
| Hpy188I | TCNGA | 9 cut(s) | 45, 919, 1423, 1580, 2535, 2773, 2806, 3063, 3369 |
| Hpy99I | CGWCG | 3 cut(s) | 434, 2310, 3406 |
| HpyAV | CCTTC | 6 cut(s) | 652, 1061, 2057, 2398, 2748, 3364 |
| HpyCH4IV | ACGT | 3 cut(s) | 1933, 2107, 2966 |
| HpySE526I | ACGT | 3 cut(s) | 1933, 2107, 2966 |
| HspAI | GCGC | 3 cut(s) | 229, 2026, 2269 |
| Ksp22I | TGATCA | 1 cut(s) | 3217 |
| KspAI | GTTAAC | 1 cut(s) | 1057 |
| LmnI | GCTCC | 7 cut(s) | 57, 1263, 2504, 2552, 2863, 2987, 3280 |
| Lsp1109I | GCAGC | 9 cut(s) | 202, 763, 871, 893, 1345, 1910, 2234, 2470, 3132 |
| LweI | GCATC | 6 cut(s) | 100, 256, 314, 845, 2120, 2539 |
| MaeI | CTAG | 4 cut(s) | 54, 1527, 1662, 3314 |
| MaeII | ACGT | 3 cut(s) | 1933, 2107, 2966 |
| MfeI | CAATTG | 2 cut(s) | 1493, 2429 |
| MflI | RGATCY | 3 cut(s) | 45, 1921, 2654 |
| MhlI | GDGCHC | 6 cut(s) | 1375, 1414, 2501, 2868, 2984, 3285 |
| MlsI | TGGCCA | 3 cut(s) | 162, 1203, 2103 |
| MluNI | TGGCCA | 3 cut(s) | 162, 1203, 2103 |
| MlyI | GAGTC | 3 cut(s) | 1567, 2160, 2551 |
| MmeI | TCCRAC | 1 cut(s) | 819 |
| Mox20I | TGGCCA | 3 cut(s) | 162, 1203, 2103 |
| Mph1103I | ATGCAT | 2 cut(s) | 1335, 1778 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1616 |
| MscI | TGGCCA | 3 cut(s) | 162, 1203, 2103 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1815, 3411 |
| Msp20I | TGGCCA | 3 cut(s) | 162, 1203, 2103 |
| MspA1I | CMGCKG | 1 cut(s) | 884 |
| MspCI | CTTAAG | 1 cut(s) | 2503 |
| MspI | CCGG | 6 cut(s) | 581, 2091, 2202, 2494, 2713, 2835 |
| MspR9I | CCNGG | 7 cut(s) | 72, 202, 853, 1278, 2202, 2495, 3014 |
| MunI | CAATTG | 2 cut(s) | 1493, 2429 |
| Mva1269I | GAATGC | 3 cut(s) | 887, 2224, 3349 |
| MvaI | CCWGG | 5 cut(s) | 72, 202, 853, 1278, 3014 |
| NciI | CCSGG | 2 cut(s) | 2202, 2495 |
| NdeI | CATATG | 3 cut(s) | 165, 1377, 2160 |
| NlaIV | GGNNCC | 4 cut(s) | 1923, 2500, 2833, 3282 |
| NmuCI | GTSAC | 7 cut(s) | 140, 298, 553, 1450, 2138, 2410, 3043 |
| NsbI | TGCGCA | 2 cut(s) | 230, 2270 |
| NsiI | ATGCAT | 2 cut(s) | 1335, 1778 |
| NspI | RCATGY | 4 cut(s) | 29, 667, 2697, 3188 |
| NspV | TTCGAA | 2 cut(s) | 392, 2902 |
| PaeI | GCATGC | 2 cut(s) | 29, 2697 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PciI | ACATGT | 1 cut(s) | 3184 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3075 |
| PctI | GAATGC | 3 cut(s) | 887, 2224, 3349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1616 |
| PfeI | GAWTC | 9 cut(s) | 563, 766, 914, 1402, 2209, 2260, 2733, 2815, 3080 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 466, 2828, 3301 |
| PfoI | TCCNGGA | 1 cut(s) | 3012 |
| PleI | GAGTC | 3 cut(s) | 1566, 2159, 2550 |
| PpsI | GAGTC | 3 cut(s) | 1566, 2159, 2550 |
| PscI | ACATGT | 1 cut(s) | 3184 |
| PshAI | GACNNNNGTC | 1 cut(s) | 820 |
| PshBI | ATTAAT | 2 cut(s) | 147, 1185 |
| PsiI | TTATAA | 1 cut(s) | 3330 |
| Psp124BI | GAGCTC | 2 cut(s) | 2868, 2984 |
| Psp6I | CCWGG | 5 cut(s) | 70, 200, 851, 1276, 3012 |
| PspEI | GGTNACC | 1 cut(s) | 1148 |
| PspGI | CCWGG | 5 cut(s) | 70, 200, 851, 1276, 3012 |
| PspN4I | GGNNCC | 4 cut(s) | 1923, 2500, 2833, 3282 |
| PsuI | RGATCY | 3 cut(s) | 45, 1921, 2654 |
| PvuII | CAGCTG | 1 cut(s) | 884 |
| RsaI | GTAC | 3 cut(s) | 476, 592, 2492 |
| RsaNI | GTAC | 3 cut(s) | 475, 591, 2491 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1815, 3411 |
| SacI | GAGCTC | 2 cut(s) | 2868, 2984 |
| SalI | GTCGAC | 1 cut(s) | 3400 |
| SchI | GAGTC | 3 cut(s) | 1567, 2160, 2551 |
| ScrFI | CCNGG | 7 cut(s) | 72, 202, 853, 1278, 2202, 2495, 3014 |
| SduI | GDGCHC | 6 cut(s) | 1375, 1414, 2501, 2868, 2984, 3285 |
| SfaNI | GCATC | 6 cut(s) | 100, 256, 314, 845, 2120, 2539 |
| SfcI | CTRYAG | 6 cut(s) | 123, 1266, 1650, 1986, 2315, 3268 |
| SfuI | TTCGAA | 2 cut(s) | 392, 2902 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1815, 3411 |
| SmlI | CTYRAG | 4 cut(s) | 440, 776, 876, 2503 |
| SmoI | CTYRAG | 4 cut(s) | 440, 776, 876, 2503 |
| SphI | GCATGC | 2 cut(s) | 29, 2697 |
| SsiI | CCGC | 5 cut(s) | 113, 1162, 1489, 2453, 3392 |
| SspI | AATATT | 3 cut(s) | 448, 1351, 1427 |
| SspMI | CTAG | 4 cut(s) | 54, 1527, 1662, 3314 |
| SstI | GAGCTC | 2 cut(s) | 2868, 2984 |
| StyD4I | CCNGG | 7 cut(s) | 70, 200, 851, 1276, 2200, 2493, 3012 |
| StyI | CCWWGG | 2 cut(s) | 2170, 2571 |
| TaiI | ACGT | 3 cut(s) | 1936, 2110, 2969 |
| TaqI | TCGA | 7 cut(s) | 392, 566, 2086, 2902, 3069, 3078, 3401 |
| TaqII | GACCGA | 1 cut(s) | 231 |
| TatI | WGTACW | 1 cut(s) | 590 |
| TauI | GCSGC | 1 cut(s) | 1492 |
| TfiI | GAWTC | 9 cut(s) | 563, 766, 914, 1402, 2209, 2260, 2733, 2815, 3080 |
| TseFI | GTSAC | 7 cut(s) | 140, 298, 553, 1450, 2138, 2410, 3043 |
| TseI | GCWGC | 9 cut(s) | 215, 751, 881, 884, 1358, 1898, 2222, 2458, 3120 |
| Tsp45I | GTSAC | 7 cut(s) | 140, 298, 553, 1450, 2138, 2410, 3043 |
| TspGWI | ACGGA | 2 cut(s) | 832, 1004 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 466, 2828, 3301 |
| Vha464I | CTTAAG | 1 cut(s) | 2503 |
| VspI | ATTAAT | 2 cut(s) | 147, 1185 |
| XapI | RAATTY | 4 cut(s) | 8, 826, 961, 2339 |
| XbaI | TCTAGA | 1 cut(s) | 3313 |
| XceI | RCATGY | 4 cut(s) | 29, 667, 2697, 3188 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2857 |
| XmiI | GTMKAC | 1 cut(s) | 3401 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1616 |
| XspI | CTAG | 4 cut(s) | 54, 1527, 1662, 3314 |
| Zsp2I | ATGCAT | 2 cut(s) | 1335, 1778 |