Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

20508409 .. 20521621

Gene Structure 13213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAAAGAATTTCAGATGGACCCAATATCTGCAATAGGGGTTTGAGACAGCTGTTTCTTTTGTTTATGTCATTCTCCTTGGCTGTAGAAGCGCTTCACGCATTTATACAGGATGAATCTGAGCACAAGTTGCAGCTCAATAAGCAGATTCAGCCACTTGAGAGTTATCTCTGTTCCAACTCATTGGATGAGGAAAGACGGAAGTCAAATTTTTCTGCATCCACAACAACTCCCAGGCATTTCCAACATGAAACACCTCAAGCAGCTGCAATCAGTTGTGAGCCAAACTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTGGGTTCTATTGAGAGTTCTCTAGCAATAACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCGAGTTGAGAGAAAATTACCACCAGGCGCACCAAGGTGCTATTCTGGCACATTGAATGCGTCTTCCACCATCTTGAGACAAGTTGTGATTGATGGCTTAAGAGATCGAAAGATTGCTTATCATCTTTGCCTACAAGAGAGATTCTGCAAGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

208

Amino Acids

23.43

Weight (kDa)

8.16

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	9, 208
AfeI	AGCGCT	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	233, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AleI	CACNNNNGTG	1 cut(s)	502
AluBI	AGCT	6 cut(s)	52, 136, 266, 304, 316, 334
AluI	AGCT	6 cut(s)	52, 136, 266, 304, 316, 334
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	40, 538
Aor51HI	AGCGCT	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	133, 263, 266
ApoI	RAATTY	2 cut(s)	9, 208
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	94, 497
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	373
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	145, 253, 275
BccI	CCATC	3 cut(s)	11, 545, 554
BciT130I	CCWGG	2 cut(s)	235, 492
BcoDI	GTCTC	2 cut(s)	40, 538
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	134, 264, 267
BlsI	GCNGC	3 cut(s)	135, 265, 268
Bme1390I	CCNGG	2 cut(s)	235, 492
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	22, 375
BmrFI	CCNGG	2 cut(s)	235, 492
BmsI	GCATC	1 cut(s)	227
BoxI	GACNNNNGTC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	522
BpuEI	CTTGAG	3 cut(s)	179, 243, 562
BsaJI	CCNNGG	3 cut(s)	78, 233, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
BseBI	CCWGG	2 cut(s)	235, 492
BseDI	CCNNGG	3 cut(s)	78, 233, 500
BseGI	GGATG	3 cut(s)	118, 193, 218
BseMII	CTCAG	2 cut(s)	111, 357
BseXI	GCAGC	3 cut(s)	145, 253, 275
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	126
BsmAI	GTCTC	2 cut(s)	40, 538
BsmI	GAATGC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	448, 571
BspCNI	CTCAG	2 cut(s)	112, 356
BspLI	GGNNCC	2 cut(s)	22, 375
BspMI	ACCTGC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	78, 233, 500
BssMI	GATC	2 cut(s)	448, 571
BssT1I	CCWWGG	2 cut(s)	78, 500
Bst2UI	CCWGG	2 cut(s)	235, 492
Bst4CI	ACNGT	2 cut(s)	290, 433
BstAFI	CTTAAG	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	120, 343
BstF5I	GGATG	3 cut(s)	118, 193, 218
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 497
BstKTI	GATC	2 cut(s)	451, 574
BstMAI	GTCTC	2 cut(s)	40, 538
BstMBI	GATC	2 cut(s)	448, 571
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 98, 130, 142, 151, 513
BstNI	CCWGG	2 cut(s)	235, 492
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	233, 490
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	145, 253, 275
BstV2I	GAAGAC	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	118, 193, 218
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	2 cut(s)	94, 497
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	516
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	120, 343
DpnI	GATC	2 cut(s)	450, 573
DpnII	GATC	2 cut(s)	448, 571
Eco130I	CCWWGG	2 cut(s)	78, 500
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	233, 490
EcoT14I	CCWWGG	2 cut(s)	78, 500
ErhI	CCWWGG	2 cut(s)	78, 500
FaeI	CATG	1 cut(s)	251
FaiI	YATR	5 cut(s)	68, 107, 249, 383, 392
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	134, 264, 267
FokI	GGATG	3 cut(s)	125, 200, 205
Fsp4HI	GCNGC	3 cut(s)	134, 264, 267
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	93, 496
GluI	GCNGC	3 cut(s)	134, 264, 267
HaeII	RGCGCY	1 cut(s)	95
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	2 cut(s)	94, 497
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	2 cut(s)	92, 495
HinP1I	GCGC	2 cut(s)	92, 495
HinfI	GANTC	3 cut(s)	116, 148, 609
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	2 cut(s)	16, 121
Hpy188III	TCNNGA	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	353, 361
HpyCH4III	ACNGT	2 cut(s)	290, 433
HpyCH4V	TGCA	7 cut(s)	4, 33, 133, 218, 269, 293, 615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 98, 130, 142, 151, 513
HpyF3I	CTNAG	2 cut(s)	120, 343
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	2 cut(s)	92, 495
Kzo9I	GATC	2 cut(s)	448, 571
LpnPI	CCDG	8 cut(s)	95, 220, 247, 333, 390, 477, 498, 504
Lsp1109I	GCAGC	3 cut(s)	145, 253, 275
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	422
MalI	GATC	2 cut(s)	450, 573
MboI	GATC	2 cut(s)	448, 571
MboII	GAAGA	2 cut(s)	368, 522
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	9, 208, 482
MmeI	TCCRAC	3 cut(s)	201, 268, 467
MnlI	CCTC	4 cut(s)	184, 267, 343, 364
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	502
MspA1I	CMGCKG	2 cut(s)	52, 266
MspCI	CTTAAG	1 cut(s)	565
MspR9I	CCNGG	2 cut(s)	235, 492
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	235, 492
MwoI	GCNNNNNNNGC	6 cut(s)	89, 98, 130, 142, 151, 513
NdeII	GATC	2 cut(s)	448, 571
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	22, 375
OliI	CACNNNNGTG	1 cut(s)	502
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	116, 148, 609
PkrI	GCNGC	3 cut(s)	135, 265, 268
PshAI	GACNNNNGTC	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	233, 490
PspGI	CCWGG	2 cut(s)	233, 490
PspN4I	GGNNCC	2 cut(s)	22, 375
PspPI	GGNCC	1 cut(s)	20
PvuII	CAGCTG	2 cut(s)	52, 266
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	134, 264, 267
Sau3AI	GATC	2 cut(s)	448, 571
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	235, 492
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	4 cut(s)	158, 258, 541, 565
SmoI	CTYRAG	4 cut(s)	158, 258, 541, 565
Sse9I	AATT	3 cut(s)	9, 208, 482
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	233, 490
StyI	CCWWGG	2 cut(s)	78, 500
TaaI	ACNGT	2 cut(s)	290, 433
TaqI	TCGA	2 cut(s)	469, 574
TasI	AATT	3 cut(s)	9, 208, 482
TfiI	GAWTC	3 cut(s)	116, 148, 609
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	3 cut(s)	133, 263, 266
TspDTI	ATGAA	2 cut(s)	129, 264
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	438
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	9, 208
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.