Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

20640208 .. 20641352

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCTTCGACTGAAGGCCTATCAGCTGCCTCGTCGGAAAGACATCTCACACATATCTCCCTCATTGTCTTCAGCGATTCATCCGAGTATTCCTTGTGCACTGCTGGATCCACAATGCTCCTTCGAGCTGTGTCATCAGTGGTCAAACTTACTTGTAACTGCAAAGCAATTTTTGTTGGTTCAATAGGGATCATTTCAAAGAGTTTGAGCGTAAAGAAAAGAACAAATAATATTTTTAAATTTTCACTGACATCTGGATACAATCGTATCAATACTGCTAATTCTGGAAGAGTACTGGAAACGAATACCGAAAATCTTTGCGCACGGTACTTGATTTTGGTTTCATGTGTAGTTTTTGAGGTCAGTTATTGTGAAAATGATGTTGATTGCCGACGACTTCTACAACTTATTCATTTCGGAGAAAACTTTGATTGTGCAACCTCCAAAAAGACTGTGAAATCGCAAAGCAACTGGTTTGTAACGATAATAAATTTTGGGAGATGTTGGCCAATGTTTCTATTGATGAATGTCAATTCCTTGCAACAGTTTGCAAATCCTTGCATTGTCTGTGTATTCCCTTCTGCCACATGTGCTCAGGTTGAACTGTTGAAGTTAACAGGGCAGCAGTTTTCGTCATCTCATATTCTAGAAGTCTACAGGGGCTCCTTAAACCAATTTGTCAAGAAACACAGGCATCAGACTGTGAGACTGCATGGAGCAGGAAAACATCTAGCCAAGGTTGAAGCTTCTCGTGTATCACGTCATCCTGTTACCGGGGACCTTCTTGTTGAGGAAGTTAAGAAAAGTGATGTTTATGGATCTGTATCGTCAAGACTAAAGGTACTTTTAATTCTTTCAGTTCACTTATGCTGGGTTTTTCATGAAGATCACCATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

300

Amino Acids

33.34

Weight (kDa)

9.11

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	654
AclWI	GGATC	4 cut(s)	102, 115, 197, 826
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	2 cut(s)	239, 490
AcuI	CTGAAG	2 cut(s)	33, 55
AfaI	GTAC	3 cut(s)	294, 329, 843
AfiI	CCNNNNNNNGG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	5 cut(s)	183, 198, 602, 610, 743
AjiI	CACGTC	1 cut(s)	761
AluBI	AGCT	3 cut(s)	26, 128, 746
AluI	AGCT	3 cut(s)	26, 128, 746
Alw21I	GWGCWC	2 cut(s)	101, 595
Alw26I	GTCTC	1 cut(s)	700
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	4 cut(s)	102, 115, 197, 826
AoxI	GGCC	2 cut(s)	16, 506
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	26, 622
ApoI	RAATTY	2 cut(s)	239, 490
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	101
BaeI	ACNNNNGTAYC	4 cut(s)	250, 250, 283, 283
BalI	TGGCCA	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	101, 595
BbvI	GCAGC	2 cut(s)	13, 634
BciVI	GTATCC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	2 cut(s)	647, 731
BfmI	CTRYAG	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	27, 623
BlsI	GCNGC	2 cut(s)	28, 624
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	775
Bme18I	GGWCC	1 cut(s)	778
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	3 cut(s)	109, 664, 779
BmrFI	CCNGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	775
BsaBI	GATNNNNATC	2 cut(s)	823, 891
BsaJI	CCNNGG	2 cut(s)	735, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse1I	ACTGG	2 cut(s)	300, 476
Bse8I	GATNNNNATC	2 cut(s)	823, 891
BseDI	CCNNGG	2 cut(s)	735, 774
BseGI	GGATG	3 cut(s)	80, 763, 892
BseJI	GATNNNNATC	2 cut(s)	823, 891
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	2 cut(s)	300, 476
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	13, 634
BseYI	CCCAGC	1 cut(s)	870
BshFI	GGCC	2 cut(s)	18, 508
BsiHKAI	GWGCWC	2 cut(s)	101, 595
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	1 cut(s)	700
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	2 cut(s)	18, 508
Bsp1286I	GDGCHC	3 cut(s)	101, 595, 665
Bsp143I	GATC	4 cut(s)	107, 189, 818, 886
BspANI	GGCC	2 cut(s)	18, 508
BspCNI	CTCAG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	880
BspLI	GGNNCC	3 cut(s)	109, 664, 779
BspPI	GGATC	4 cut(s)	102, 115, 197, 826
BsrI	ACTGG	2 cut(s)	300, 476
BssECI	CCNNGG	2 cut(s)	735, 774
BssMI	GATC	4 cut(s)	107, 189, 818, 886
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	735
Bst2BI	CACGAG	1 cut(s)	750
Bst4CI	ACNGT	5 cut(s)	327, 454, 546, 606, 703
Bst6I	CTCTTC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	80, 763, 892
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	4 cut(s)	110, 192, 821, 889
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	4 cut(s)	107, 189, 818, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	773
BstSFI	CTRYAG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	13, 634
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	2 cut(s)	107, 818
BstYI	RGATCY	2 cut(s)	107, 818
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	18, 508
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	3 cut(s)	80, 763, 892
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	99, 144, 245
CciI	TCATGA	1 cut(s)	880
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	3 cut(s)	293, 328, 842
CviAII	CATG	4 cut(s)	345, 588, 713, 881
CviJI	RGCY	7 cut(s)	18, 26, 128, 508, 663, 734, 746
CviKI_1	RGCY	7 cut(s)	18, 26, 128, 508, 663, 734, 746
CviQI	GTAC	3 cut(s)	293, 328, 842
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	4 cut(s)	109, 191, 820, 888
DpnII	GATC	4 cut(s)	107, 189, 818, 886
DraI	TTTAAA	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	735
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	665
Eco47I	GGWCC	1 cut(s)	778
Eco57I	CTGAAG	2 cut(s)	33, 55
EcoO109I	RGGNCCY	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	4 cut(s)	348, 591, 716, 884
FaiI	YATR	8 cut(s)	54, 346, 589, 642, 714, 816, 868, 882
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	344, 587, 712, 880
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	2 cut(s)	27, 623
FokI	GGATG	3 cut(s)	67, 750, 879
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	2 cut(s)	27, 623
FspBI	CTAG	2 cut(s)	647, 731
FspI	TGCGCA	1 cut(s)	322
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	2 cut(s)	27, 623
GsaI	CCCAGC	1 cut(s)	874
HaeIII	GGCC	2 cut(s)	18, 508
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	348, 591, 716, 884
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	1 cut(s)	77
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	4 cut(s)	99, 615, 655, 862
Hpy188I	TCNGA	4 cut(s)	37, 85, 419, 699
Hpy188III	TCNNGA	6 cut(s)	255, 285, 647, 682, 831, 881
Hpy8I	GTNNAC	4 cut(s)	99, 615, 655, 862
Hpy99I	CGWCG	2 cut(s)	37, 396
HpyAV	CCTTC	4 cut(s)	8, 131, 588, 791
HpyCH4III	ACNGT	5 cut(s)	327, 454, 546, 606, 703
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	7 cut(s)	99, 162, 437, 541, 551, 561, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	4 cut(s)	348, 591, 716, 884
HspAI	GCGC	1 cut(s)	321
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	107, 189, 818, 886
LmnI	GCTCC	3 cut(s)	123, 668, 716
Lsp1109I	GCAGC	2 cut(s)	13, 634
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	2 cut(s)	647, 731
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	3 cut(s)	155, 478, 769
MalI	GATC	4 cut(s)	109, 191, 820, 888
MboI	GATC	4 cut(s)	107, 189, 818, 886
MboII	GAAGA	3 cut(s)	61, 300, 896
MflI	RGATCY	2 cut(s)	107, 818
MhlI	GDGCHC	3 cut(s)	101, 595, 665
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	7 cut(s)	168, 239, 280, 490, 532, 674, 849
MluNI	TGGCCA	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	40, 71, 352, 451, 784
Mox20I	TGGCCA	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	5 cut(s)	237, 614, 668, 798, 848
Msp20I	TGGCCA	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	1 cut(s)	590
NciI	CCSGG	1 cut(s)	775
NdeII	GATC	4 cut(s)	107, 189, 818, 886
NlaIII	CATG	4 cut(s)	348, 591, 716, 884
NlaIV	GGNNCC	3 cut(s)	109, 664, 779
NsbI	TGCGCA	1 cut(s)	322
NspI	RCATGY	1 cut(s)	591
PagI	TCATGA	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	18
PciI	ACATGT	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	757
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	28, 624
PpuMI	RGGWCCY	1 cut(s)	778
PscI	ACATGT	1 cut(s)	587
Psp5II	RGGWCCY	1 cut(s)	778
PspFI	CCCAGC	1 cut(s)	870
PspN4I	GGNNCC	3 cut(s)	109, 664, 779
PspPI	GGNCC	1 cut(s)	778
PspPPI	RGGWCCY	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	107, 818
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	294, 329, 843
RsaNI	GTAC	3 cut(s)	293, 328, 842
SaqAI	TTAA	5 cut(s)	237, 614, 668, 798, 848
SatI	GCNGC	2 cut(s)	27, 623
Sau3AI	GATC	4 cut(s)	107, 189, 818, 886
Sau96I	GGNCC	1 cut(s)	778
ScaI	AGTACT	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	3 cut(s)	101, 595, 665
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	778
Sse9I	AATT	7 cut(s)	168, 239, 280, 490, 532, 674, 849
SseBI	AGGCCT	1 cut(s)	18
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	647, 731
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	773
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	5 cut(s)	327, 454, 546, 606, 703
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	2 cut(s)	8, 124
TasI	AATT	7 cut(s)	168, 239, 280, 490, 532, 674, 849
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	5 cut(s)	237, 614, 668, 798, 848
Tru9I	TTAA	5 cut(s)	237, 614, 668, 798, 848
TscAI	CASTG	3 cut(s)	106, 144, 252
TseI	GCWGC	2 cut(s)	26, 622
TspDTI	ATGAA	6 cut(s)	69, 333, 401, 539, 869, 897
TspRI	CASTG	3 cut(s)	106, 144, 252
VneI	GTGCAC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	2 cut(s)	239, 490
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	2 cut(s)	647, 731
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.