Rh7BG172400

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000962
Physical Location & Seq
Forward (+)
13473830 .. 13474218
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG172400.1

Sequence Viewer

Length: 282 bp
ATGGTGCAAGATATGTGGAATGATCCGCCGGGTTTCAGACCTACCCAATCTGCTCCTTCTTTTCCGGCCAAGCCTCTCGGAGTTTCAAGAACTCGGTCTGAGTCGCTCCATGTGACTCACAAGGTCCCGATGGGGGACACTCCTTACGTCAGAGCCAAGCATGTTCAGCTGGTGGATAAGGATGCAGAGAGGGCTATTCCTCTGTTCTGGGCCGCCATTAATTCTGGGGATAGAGTTGACAGTGCTTTCAACTATTGTGATGAAACAACAGAACAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

5.83

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 213
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 87, 250
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 17
AoxI GGCC 2 cut(s) 66, 210
AseI ATTAAT 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 124, 210
AsuC2I CCSGG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 124
BccI CCATC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 30
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 124, 210
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 68, 212
BsiSI CCGG 2 cut(s) 29, 65
BslFI GGGAC 2 cut(s) 110, 149
BslI CCNNNNNNNGG 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 110, 149
BsnI GGCC 2 cut(s) 68, 212
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 2 cut(s) 26, 213
BspANI GGCC 2 cut(s) 68, 212
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 17
BssMI GATC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 166, 191
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 28
BsuRI GGCC 2 cut(s) 68, 212
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 124, 210
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 2 cut(s) 110, 161
CviJI RGCY 7 cut(s) 68, 73, 155, 169, 194, 212, 279
CviKI_1 RGCY 7 cut(s) 68, 73, 155, 169, 194, 212, 279
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 66
EciI GGCGGA 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 124
FaeI CATG 2 cut(s) 113, 164
FaiI YATR 3 cut(s) 14, 111, 162
FaqI GGGAC 2 cut(s) 110, 149
FatI CATG 2 cut(s) 109, 160
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 2 cut(s) 68, 212
HapII CCGG 2 cut(s) 29, 65
Hin1II CATG 2 cut(s) 113, 164
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 101, 115
HpaII CCGG 2 cut(s) 29, 65
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 4 cut(s) 38, 80, 100, 152
Hpy188III TCNNGA 2 cut(s) 87, 127
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 7, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 191
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 113, 164
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 58, 111
LpnPI CCDG 6 cut(s) 42, 78, 155, 193, 210, 260
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MluCI AATT 1 cut(s) 220
MlyI GAGTC 2 cut(s) 109, 110
MnlI CCTC 3 cut(s) 84, 183, 210
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 29, 65
MspR9I CCNGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 166, 191
NciI CCSGG 1 cut(s) 30
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 113, 164
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 164
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 2 cut(s) 109, 109
PpsI GAGTC 2 cut(s) 109, 109
PpuMI RGGWCCY 1 cut(s) 124
PshBI ATTAAT 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 124, 210
PspPPI RGGWCCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 169
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 124, 210
SchI GAGTC 2 cut(s) 109, 110
ScrFI CCNGG 1 cut(s) 30
SetI ASST 4 cut(s) 43, 126, 150, 171
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 124
Sse9I AATT 1 cut(s) 220
SsiI CCGC 2 cut(s) 26, 213
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 150
TaqII GACCGA 1 cut(s) 84
TasI AATT 1 cut(s) 220
TauI GCSGC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 219
XceI RCATGY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.