Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

5209025 .. 5210966

Gene Structure 1942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1056800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGATTTGATTCACAGGTTCATCCACATAATGAGTCTGGAGGATATGAAAGATGTAATTCATCATCAGTTTCATTCTCTTCTGTTGATAGGCTTGGTTTCTCATCTTGTCCTGTTGAGAAGGAACCATGCATTTCAAAGTTTGTTGAAGTTAACTACATTGAAGGTTCCAAGGACAAAAAATGGAGTAGTGATAATTTTCCGTGGACCAATAAGCTGGAGGTGCTGGATGGTAACAAGAAAGTGTTTGGAAATCACTCTTTCCGTCTCAACCAAAGAGAGGTCATTAATGCTACGATGAGTGGCTATGATGTTTTTGTTTTAATGCCAACTGGAGGGGGTAAGAGCTTGACATATCAGCTCCCTGCGCTAATTTGTCAAGGAATAACATTGGTTATTTCTCCCCTTGTGTCACTCATTCAAGATCAAATAATGCATTTATTGCAGGCAAACATTCCCGCTGCTTACCTAAGTGCCAATATGGAGTGGACTGAACAACAGGAAATACTTAGAGAACTAAATTATGAATATTGTAAATACAAGCTGTTATATGTCACCCCAGAGAAAGTTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

193

Amino Acids

21.79

Weight (kDa)

6.09

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	91 - 191	3.9e-15	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	280, 335
AgsI	TTSAA	4 cut(s)	138, 149, 164, 422
AluBI	AGCT	4 cut(s)	217, 348, 361, 544
AluI	AGCT	4 cut(s)	217, 348, 361, 544
Alw26I	GTCTC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	126, 169
BpmI	CTGGAG	3 cut(s)	60, 239, 354
BsaJI	CCNNGG	2 cut(s)	171, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 335
Bse1I	ACTGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	171, 203
BseGI	GGATG	2 cut(s)	22, 235
BseLI	CCNNNNNNNGG	2 cut(s)	280, 335
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	280, 335
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	126, 169
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	171, 203
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	470, 509, 573
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	22, 235
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 367, 442
BstV1I	GCAGC	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	22, 235
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	6 cut(s)	94, 217, 306, 348, 361, 544
CviKI_1	RGCY	6 cut(s)	94, 217, 306, 348, 361, 544
DdeI	CTNAG	3 cut(s)	470, 509, 573
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	134, 438
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	132
FaiI	YATR	9 cut(s)	30, 48, 130, 309, 355, 482, 525, 550, 552
FatI	CATG	1 cut(s)	128
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	2 cut(s)	9, 242
Fsp4HI	GCNGC	1 cut(s)	462
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	462
GsuI	CTGGAG	3 cut(s)	60, 239, 354
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	11, 35
HpaI	GTTAAC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	3 cut(s)	154, 207, 489
Hpy188III	TCNNGA	2 cut(s)	39, 422
Hpy8I	GTNNAC	3 cut(s)	154, 207, 489
HpyAV	CCTTC	2 cut(s)	115, 158
HpyCH4V	TGCA	3 cut(s)	132, 436, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 367, 442
HpyF3I	CTNAG	3 cut(s)	470, 509, 573
Hsp92II	CATG	1 cut(s)	132
HspAI	GCGC	1 cut(s)	368
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	1 cut(s)	448
MaeIII	GTNAC	3 cut(s)	233, 411, 553
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	1 cut(s)	72
MluCI	AATT	4 cut(s)	58, 196, 372, 520
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	4 cut(s)	35, 214, 274, 329
Mph1103I	ATGCAT	2 cut(s)	134, 438
MseI	TTAA	3 cut(s)	153, 288, 323
MspA1I	CMGCKG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	223, 367, 442
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	2 cut(s)	126, 169
NmuCI	GTSAC	2 cut(s)	411, 553
NsiI	ATGCAT	2 cut(s)	134, 438
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	126, 169
PspPI	GGNCC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	153, 288, 323
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	44
SetI	ASST	9 cut(s)	21, 169, 219, 225, 285, 350, 363, 471, 546
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	4 cut(s)	58, 196, 372, 520
SsiI	CCGC	1 cut(s)	459
SspI	AATATT	1 cut(s)	530
StyI	CCWWGG	1 cut(s)	171
TasI	AATT	4 cut(s)	58, 196, 372, 520
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	153, 288, 323
Tru9I	TTAA	3 cut(s)	153, 288, 323
TseFI	GTSAC	2 cut(s)	411, 553
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	2 cut(s)	411, 553
TspDTI	ATGAA	5 cut(s)	11, 51, 63, 63, 540
TspGWI	ACGGA	2 cut(s)	192, 254
VpaK11BI	GGWCC	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	288
Zsp2I	ATGCAT	2 cut(s)	134, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.