Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

20651973 .. 20654585

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTGGAAATATACAGCTCTTTGTCTGAAGCTGACAAGAAGGAGTTTGAGACTGCATATAGTGCCTCCTATTATCCTTGCATGGACATCCTCTATGAATGCTATGAGGATGTAGCAAGCGGCAGTGAGATCCGTAGCATTGTTTTGGCTGGGCGGCGATTTTATATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTTTGCCTTCTTTCCTTTGCAGCTGCATTCAGGAATGACCCCGTGAGATTTGATTCAGAGGTTCATCTACATAATGAGGCAGGAGGATATGCAGAGTGGAATTCATCATCAGTTTCATCCTCTTCTACGGATAAGTTTGGTTTCTCTTCTTTTCCTGTTGAGAGAGAACCTTACATCCCAAAGTTTGTTGAAGTTAACTATACTGAAGGTTCAAATGACAAGAAGTGGAGGGATGGTCCTTTCCCGTGGACTAAAGAACTGGAGGCTAATAATAAGAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATTAATGCTACAATGAGTGGCCATGATGTTTTCGTTTTAATGCCAATTGGAGGGGGTAAGAGCCTGACATATCAGGTACTTGAATCTTTTTCTCACGACTCTTTTGACTTGTTTCAGGTAATGTTTTTCTTCCAGACTTTATTTTCATTTGGATTTTACCTTTTCTTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

250

Amino Acids

28.68

Weight (kDa)

4.71

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	120, 154, 559
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	2 cut(s)	48, 483
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	2 cut(s)	574, 629
AgsI	TTSAA	3 cut(s)	449, 471, 662
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	4 cut(s)	18, 32, 185, 281
AluI	AGCT	4 cut(s)	18, 32, 185, 281
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	3 cut(s)	185, 278, 281
ApoI	RAATTY	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	600
BbvI	GCAGC	3 cut(s)	172, 268, 290
BccI	CCATC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	5 cut(s)	121, 155, 186, 279, 282
BlsI	GCNGC	5 cut(s)	122, 156, 187, 280, 283
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 629
Bse1I	ACTGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	5 cut(s)	87, 115, 374, 432, 496
BseLI	CCNNNNNNNGG	2 cut(s)	574, 629
BseNI	ACTGG	1 cut(s)	522
BseXI	GCAGC	3 cut(s)	172, 268, 290
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	574, 629
BsmAI	GTCTC	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	104, 284
BsnI	GGCC	1 cut(s)	600
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	3 cut(s)	120, 154, 559
BspANI	GGCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	385, 409
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	503
BstEII	GGTNACC	1 cut(s)	545
BstF5I	GGATG	5 cut(s)	87, 115, 374, 432, 496
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	172, 268, 290
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	5 cut(s)	87, 115, 374, 432, 496
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	3 cut(s)	82, 214, 602
CviJI	RGCY	8 cut(s)	18, 32, 149, 185, 281, 524, 600, 642
CviKI_1	RGCY	8 cut(s)	18, 32, 149, 185, 281, 524, 600, 642
CviQI	GTAC	1 cut(s)	656
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	2 cut(s)	385, 409
EarI	CTCTTC	2 cut(s)	385, 409
EciI	GGCGGA	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	48, 483
Eco91I	GGTNACC	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	358
FaeI	CATG	3 cut(s)	85, 217, 605
FatI	CATG	3 cut(s)	81, 213, 601
Fnu4HI	GCNGC	5 cut(s)	121, 155, 186, 279, 282
FokI	GGATG	5 cut(s)	74, 122, 361, 419, 503
Fsp4HI	GCNGC	5 cut(s)	121, 155, 186, 279, 282
GluI	GCNGC	5 cut(s)	121, 155, 186, 279, 282
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	85, 217, 605
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	3 cut(s)	311, 662, 677
HpaI	GTTAAC	1 cut(s)	454
Hpy166II	GTNNAC	2 cut(s)	454, 507
Hpy188I	TCNGA	2 cut(s)	28, 316
Hpy188III	TCNNGA	3 cut(s)	289, 674, 712
Hpy8I	GTNNAC	2 cut(s)	454, 507
HpyAV	CCTTC	4 cut(s)	34, 202, 275, 458
HpyCH4V	TGCA	7 cut(s)	56, 81, 188, 199, 278, 284, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	85, 217, 605
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	129
Lsp1109I	GCAGC	3 cut(s)	172, 268, 290
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	4 cut(s)	372, 396, 700, 736
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	3 cut(s)	219, 358, 624
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	3 cut(s)	453, 582, 617
Msp20I	TGGCCA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	2 cut(s)	104, 284
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	3 cut(s)	85, 217, 605
NspI	RCATGY	1 cut(s)	217
PctI	GAATGC	2 cut(s)	104, 284
PfeI	GAWTC	2 cut(s)	311, 662
PkrI	GCNGC	5 cut(s)	122, 156, 187, 280, 283
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	582
PspEI	GGTNACC	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	453, 582, 617
SatI	GCNGC	5 cut(s)	121, 155, 186, 279, 282
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	671
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	3 cut(s)	219, 358, 624
SsiI	CCGC	3 cut(s)	120, 154, 559
TasI	AATT	3 cut(s)	219, 358, 624
TauI	GCSGC	2 cut(s)	123, 157
TfiI	GAWTC	2 cut(s)	311, 662
Tru1I	TTAA	3 cut(s)	453, 582, 617
Tru9I	TTAA	3 cut(s)	453, 582, 617
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	3 cut(s)	185, 278, 281
TspDTI	ATGAA	8 cut(s)	111, 221, 249, 270, 311, 351, 363, 714
TspGWI	ACGGA	2 cut(s)	122, 401
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.