Rroxscaffold_176G00431210

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0000962
Physical Location & Seq
Forward (+)
570656 .. 575114
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431210.1

Sequence Viewer

Length: 750 bp
ATGCCTTATCTCCAGGCCTCCACCAAGGGACCCAGATGGCTTTGGAATCCCATTCATTTGGATCGTACAAAATCGACAGCAGGGAAGTGTTGCTGCTGGATGGCATTCTACTGCACTAACATGCCTATCCATTCCAGACATGAAGTAAAGCGCTTTGTTGATCTCACTGTTGATGATATCAGTGATCTTTGGATAATAGTCAAAAGGGAGGCAAGGAGTATAGAAACTGTCCACGGACTTTCTGGTCTTACTTTGGTGGATATTGCTGCTGGATGGCATTCTACTGCACTAACAGATGATGGAGAGGTGATGATTACTCTCACTCTGCTAAATATTAGCTGTGAGGTTTTTCATTTGCATGAGTGTAATCTATTGGATGCTGTTATTAGTCTAAAGGTGGTGTATGGATGGGGCCGAGGGGAACATGGTAGACTTGGTTTCGGCGAGAATGATAAGAGCAGTAAAATGGTCCAGCAAAAGGTTCATCTTTTAGCTGGGGAGGATATCGTTCAGATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTTTGCCTTCTTTCCTTTGCAGCTGCATTCAGGAATGACCCCGTGAGATTTGATTCAGAGGTTCATCTACATAATGAGGCAGGAGGATATGCAGAGTGGAATTCATCATCAGTTTCATCCTCTTCTACGGATAAGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

249

Amino Acids

27.84

Weight (kDa)

5.49

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 430
AclWI GGATC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 706
AfaI GTAC 1 cut(s) 67
AfeI AGCGCT 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 1 cut(s) 745
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 339, 494, 533, 629
AluI AGCT 4 cut(s) 339, 494, 533, 629
AlwI GGATC 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 533
Aor51HI AGCGCT 1 cut(s) 152
AoxI GGCC 2 cut(s) 15, 412
ApeKI GCWGC 5 cut(s) 93, 266, 533, 626, 629
ApoI RAATTY 1 cut(s) 706
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 29, 412, 469
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 29, 469
BbvI GCAGC 5 cut(s) 80, 253, 520, 616, 638
BccI CCATC 5 cut(s) 30, 94, 267, 293, 402
BciT130I CCWGG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 154
BisI GCNGC 5 cut(s) 94, 267, 534, 627, 630
BlsI GCNGC 5 cut(s) 95, 268, 535, 628, 631
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 29, 469
BmgT120I GGNCC 3 cut(s) 29, 412, 469
BmiI GGNNCC 3 cut(s) 30, 31, 413
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 367
BsaJI CCNNGG 3 cut(s) 24, 232, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 3 cut(s) 24, 232, 415
BseGI GGATG 5 cut(s) 105, 278, 382, 413, 722
BseLI CCNNNNNNNGG 1 cut(s) 478
BseXI GCAGC 5 cut(s) 80, 253, 520, 616, 638
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 2 cut(s) 97, 270
BshFI GGCC 2 cut(s) 17, 414
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 3 cut(s) 104, 277, 632
BsnI GGCC 2 cut(s) 17, 414
Bsp143I GATC 3 cut(s) 61, 160, 184
BspANI GGCC 2 cut(s) 17, 414
BspLI GGNNCC 3 cut(s) 30, 31, 413
BspPI GGATC 1 cut(s) 69
BssECI CCNNGG 3 cut(s) 24, 232, 415
BssMI GATC 3 cut(s) 61, 160, 184
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 169, 229
Bst6I CTCTTC 1 cut(s) 733
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 5 cut(s) 105, 278, 382, 413, 722
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 64, 163, 187
BstMBI GATC 3 cut(s) 61, 160, 184
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 2 cut(s) 124, 565
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 5 cut(s) 80, 253, 520, 616, 638
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 17, 414
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 5 cut(s) 105, 278, 382, 413, 722
BtsIMutI CAGTG 2 cut(s) 165, 187
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 3 cut(s) 29, 412, 469
Csp6I GTAC 1 cut(s) 66
CviAII CATG 5 cut(s) 121, 140, 359, 425, 562
CviJI RGCY 7 cut(s) 17, 40, 339, 414, 494, 533, 629
CviKI_1 RGCY 7 cut(s) 17, 40, 339, 414, 494, 533, 629
CviQI GTAC 1 cut(s) 66
DpnI GATC 3 cut(s) 63, 162, 186
DpnII GATC 3 cut(s) 61, 160, 184
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 17
Eco32I GATATC 2 cut(s) 178, 505
Eco47I GGWCC 2 cut(s) 29, 469
Eco47III AGCGCT 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 2 cut(s) 178, 505
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 5 cut(s) 124, 143, 362, 428, 565
FaqI GGGAC 1 cut(s) 42
FatI CATG 5 cut(s) 120, 139, 358, 424, 561
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 5 cut(s) 94, 267, 534, 627, 630
FokI GGATG 5 cut(s) 112, 285, 389, 420, 709
Fsp4HI GCNGC 5 cut(s) 94, 267, 534, 627, 630
GlaI GCGC 1 cut(s) 152
GluI GCNGC 5 cut(s) 94, 267, 534, 627, 630
GsaI CCCAGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 2 cut(s) 17, 414
HhaI GCGC 1 cut(s) 153
Hin1II CATG 5 cut(s) 124, 143, 362, 428, 565
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 2 cut(s) 46, 659
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 232, 431
Hpy188I TCNGA 2 cut(s) 513, 664
Hpy188III TCNNGA 2 cut(s) 135, 637
Hpy8I GTNNAC 2 cut(s) 232, 431
HpyAV CCTTC 2 cut(s) 550, 623
HpyCH4III ACNGT 2 cut(s) 169, 229
HpyCH4V TGCA 8 cut(s) 114, 287, 358, 536, 547, 626, 632, 698
Hsp92II CATG 5 cut(s) 124, 143, 362, 428, 565
HspAI GCGC 1 cut(s) 151
KflI GGGWCCC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 61, 160, 184
Lsp1109I GCAGC 5 cut(s) 80, 253, 520, 616, 638
LweI GCATC 1 cut(s) 367
MalI GATC 3 cut(s) 63, 162, 186
MboI GATC 3 cut(s) 61, 160, 184
MboII GAAGA 1 cut(s) 720
MluCI AATT 2 cut(s) 567, 706
MslI CAYNNNNRTG 2 cut(s) 119, 357
MspA1I CMGCKG 1 cut(s) 629
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 3 cut(s) 104, 277, 632
MvaI CCWGG 1 cut(s) 14
NdeII GATC 3 cut(s) 61, 160, 184
NlaIII CATG 5 cut(s) 124, 143, 362, 428, 565
NlaIV GGNNCC 3 cut(s) 30, 31, 413
NmeAIII GCCGAG 1 cut(s) 440
NspI RCATGY 2 cut(s) 124, 565
PceI AGGCCT 1 cut(s) 17
PctI GAATGC 3 cut(s) 104, 277, 632
PfeI GAWTC 2 cut(s) 46, 659
PkrI GCNGC 5 cut(s) 95, 268, 535, 628, 631
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 3 cut(s) 30, 31, 413
PspPI GGNCC 3 cut(s) 29, 412, 469
PspPPI RGGWCCY 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 119, 357
SatI GCNGC 5 cut(s) 94, 267, 534, 627, 630
Sau3AI GATC 3 cut(s) 61, 160, 184
Sau96I GGNCC 3 cut(s) 29, 412, 469
ScrFI CCNGG 1 cut(s) 14
SetI ASST 9 cut(s) 309, 341, 348, 399, 483, 496, 535, 631, 669
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 2 cut(s) 29, 469
SmiMI CAYNNNNRTG 2 cut(s) 119, 357
Sse9I AATT 2 cut(s) 567, 706
SseBI AGGCCT 1 cut(s) 17
SspI AATATT 1 cut(s) 334
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 169, 229
TaqI TCGA 1 cut(s) 74
TasI AATT 2 cut(s) 567, 706
TfiI GAWTC 2 cut(s) 46, 659
TscAI CASTG 2 cut(s) 172, 187
TseI GCWGC 5 cut(s) 93, 266, 533, 626, 629
TspGWI ACGGA 2 cut(s) 249, 749
TspRI CASTG 2 cut(s) 172, 187
VpaK11BI GGWCC 2 cut(s) 29, 469
XapI RAATTY 1 cut(s) 706
XceI RCATGY 2 cut(s) 124, 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.