RchiOBHm_Chr2g0101731

ATP-dependent DNA helicase Q-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
13205291 .. 13205910
620 bp
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UTR
Exon/CDS
Intron
PRQ47626

Sequence Viewer

Length: 540 bp
ATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTTTGCCTTCTTTCCTTTACAGCTGCATTCAGGAATGACCCCGTGAGATTTGATTCAGAGGTTCATCTACATAATGAGGCAGGAGGATATGCAGAGTGGAATTCATCATCAGTTTCATCCTCTTCTACGGATAAGTTTGGTTTCTCTTCTTTTCCTGTTGAGAGAGAACCTTACATCCCAAAGTTTGTTGAAGTTAACTATACTGAAGGTTCAAATGACAAGAAGTGGAGGGATGGTCCTTTCCCGTGGACTAAAGAACTGGAGGCTAATAATAAGAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATTAATGCTACAATGAGTGGCCATGATGTTTTCGTTTTAATGCCAATTGGAGGGGGTAAGAGCCTGACATATCAGGTACTTGAATCTTTTTCTCACGACTCTTTTGACTTGTTTCAGGTAATGTTTTTCTTCCAGACTTTATTTTCATTTGGATTTTACCTTTTCTTCTATTGA

Protein Analysis

179

Amino Acids

20.61

Weight (kDa)

4.93

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 361, 416
AgsI TTSAA 3 cut(s) 236, 258, 449
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 145
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 281
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 387
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 272
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 416
Bse1I ACTGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 3 cut(s) 161, 219, 283
BseLI CCNNNNNNNGG 2 cut(s) 361, 416
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 361, 416
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 387
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 172, 196
BstDSI CCRYGG 1 cut(s) 290
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 3 cut(s) 161, 219, 283
BstPI GGTNACC 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 161, 219, 283
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 443
CviAII CATG 1 cut(s) 389
CviJI RGCY 4 cut(s) 68, 311, 387, 429
CviKI_1 RGCY 4 cut(s) 68, 311, 387, 429
CviQI GTAC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 172, 196
EarI CTCTTC 2 cut(s) 172, 196
EciI GGCGGA 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 270
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 145
FaeI CATG 1 cut(s) 392
FaiI YATR 6 cut(s) 14, 117, 135, 246, 390, 436
FatI CATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 3 cut(s) 148, 206, 290
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 387
Hin1II CATG 1 cut(s) 392
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 3 cut(s) 98, 449, 464
HpaI GTTAAC 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 241, 294
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 76, 461, 499
Hpy8I GTNNAC 2 cut(s) 241, 294
HpyAV CCTTC 2 cut(s) 62, 245
HpyCH4V TGCA 2 cut(s) 71, 137
Hsp92II CATG 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 61, 111, 213, 290, 425, 443, 467, 512
Lsp1109I GCAGC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 332
MboII GAAGA 4 cut(s) 159, 183, 487, 523
MfeI CAATTG 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 3 cut(s) 6, 145, 411
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 9 cut(s) 97, 115, 122, 175, 267, 301, 355, 359, 410
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 3 cut(s) 240, 369, 404
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 68
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 392
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 98, 449
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
SaqAI TTAA 3 cut(s) 240, 369, 404
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 458
SetI ASST 8 cut(s) 70, 108, 217, 256, 366, 444, 486, 528
SinI GGWCC 1 cut(s) 281
Sse9I AATT 3 cut(s) 6, 145, 411
SsiI CCGC 1 cut(s) 346
TasI AATT 3 cut(s) 6, 145, 411
TfiI GAWTC 2 cut(s) 98, 449
Tru1I TTAA 3 cut(s) 240, 369, 404
Tru9I TTAA 3 cut(s) 240, 369, 404
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 6 cut(s) 36, 57, 98, 138, 150, 501
TspGWI ACGGA 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 281
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.