Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

36395592 .. 36401887

Gene Structure 6296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGTTCGGTGATCATTCGAGCCCCTTTGAAACCATTACTCCTGGTTGAACTGGTGAAATTAGCAGGGCAGCAGTGTTCATCAGCTCATATCTTAGAAGTCTACAGGAGCTCCTTAAGCCAATTTGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCAGGAAGACAATCATGTTAAGGTCATGCTTTTCACTGATGATGTTTTCAGATCTCTCTGCCACATTATTTGTTTCTTTGAAAATGCTTCGAACTACTCTCGTAAGGGAAGCTGAGGATGGGTTCATGGCATACCAAGTATTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

8.96

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	31, 50, 139, 241
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	86, 111, 272
AluI	AGCT	3 cut(s)	86, 111, 272
Alw21I	GWGCWC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	22, 67
AsuII	TTCGAA	1 cut(s)	250
BanII	GRGCYC	2 cut(s)	25, 113
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	115
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 95, 125
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	25, 113
Bsp143I	GATC	2 cut(s)	12, 211
BspCNI	CTCAG	1 cut(s)	265
BspT104I	TTCGAA	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	12, 211
Bst2UI	CCWGG	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	94, 273
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	15, 214
BstMBI	GATC	2 cut(s)	12, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 194
Cac8I	GCNNGC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	4 cut(s)	144, 175, 186, 286
CviJI	RGCY	5 cut(s)	23, 86, 111, 120, 272
CviKI_1	RGCY	5 cut(s)	23, 86, 111, 120, 272
DdeI	CTNAG	2 cut(s)	94, 273
DpnI	GATC	2 cut(s)	14, 213
DpnII	GATC	2 cut(s)	12, 211
Ecl136II	GAGCTC	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	25, 113
Eco53kI	GAGCTC	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	2 cut(s)	25, 113
FaeI	CATG	4 cut(s)	147, 178, 189, 289
FaiI	YATR	6 cut(s)	90, 145, 176, 187, 287, 292
FatI	CATG	4 cut(s)	143, 174, 185, 285
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	25, 113
Fsp4HI	GCNGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	147, 178, 189, 289
HphI	GGTGA	2 cut(s)	22, 67
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	94, 273
Hsp92II	CATG	4 cut(s)	147, 178, 189, 289
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 211
LmnI	GCTCC	2 cut(s)	108, 116
LpnPI	CCDG	7 cut(s)	29, 38, 51, 56, 91, 144, 148
Lsp1109I	GCAGC	1 cut(s)	82
MalI	GATC	2 cut(s)	14, 213
MboI	GATC	2 cut(s)	12, 211
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	25, 113
MluCI	AATT	2 cut(s)	59, 122
MnlI	CCTC	1 cut(s)	268
MseI	TTAA	3 cut(s)	116, 129, 179
MspCI	CTTAAG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	2 cut(s)	12, 211
NlaIII	CATG	4 cut(s)	147, 178, 189, 289
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	116, 129, 179
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	12, 211
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	25, 113
SetI	ASST	4 cut(s)	88, 113, 185, 274
SfcI	CTRYAG	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	59, 122
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	42
TaqI	TCGA	2 cut(s)	19, 250
TasI	AATT	2 cut(s)	59, 122
Tru1I	TTAA	3 cut(s)	116, 129, 179
Tru9I	TTAA	3 cut(s)	116, 129, 179
TscAI	CASTG	2 cut(s)	80, 201
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	69, 274
TspRI	CASTG	2 cut(s)	80, 201
Vha464I	CTTAAG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.