Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

34386668 .. 34388378

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAATAGAGGAGAACCACAGATGAGTCGTACCCATTTGGGCAATGGTGCTGCTGCTGCTGCTGACACCACGCCTTTCAAACTTGGTTTATTGGAGCATATTACAGCACTCGACAATTTCTCAACCCCAAGTGAAGTTCTCAGCTCACATTTCCTTTTCTCCTTACCAACTCAAAAACCTCCAATGGCTACTAGCTCAATGGCCTTTCCGATCCAGCATGTTCAAAGATTAGAGAGTGCACAAGTTCAAAAGGCTTGGCATGCCCTTTCCAATCTTCAGATCTCTTCTAGGAGCTACACAAGACCTGGAAAAACTGTCCAACTTAAAAATGCTAGCGCTGAGTTTACTCATGATGCGGGAAGAACTACAGTTGTAAGCTCATGTGACATTAATAAAAGTAGTGGCCATATGCAAACACATCAATACATCGATGAAAGCAATGCCAGGTTAAGTGAAGCTGCAAGCTGTCTGCGCAGTGGGTTTCGGTCAAGTAACTACAATGTTGCAGATGCAGGAAAAAGTCTTCGGGGGCATAGTCAGGTCACAGCATCACTGGTCAAGAATTCTCATTCTCAGGTGTCTGGTGGTTCATTTAGCAATAATAGTGTTCATACCAGCCAAGCGAAAGAATGTTCGAACAATTTCGTGAATGAGATGGATGCTGGTGATGATGACGACATACTTGAGATTGCAATAAATAAAAAAATATGTGACTTGGCGGTATCTAGTGAATCCAGAATATTGATGTTGACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

252

Amino Acids

27.21

Weight (kDa)

6.83

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	473
AciI	CCGC	2 cut(s)	356, 719
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	79, 224, 248
AjnI	CCWGG	2 cut(s)	304, 443
AluBI	AGCT	6 cut(s)	144, 195, 294, 378, 458, 465
AluI	AGCT	6 cut(s)	144, 195, 294, 378, 458, 465
Alw21I	GWGCWC	1 cut(s)	241
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	337
AoxI	GGCC	2 cut(s)	201, 403
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	5 cut(s)	50, 53, 56, 59, 458
ApoI	RAATTY	1 cut(s)	562
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	2 cut(s)	338, 474
AsuHPI	GGTGA	1 cut(s)	677
AsuII	TTCGAA	1 cut(s)	635
AsuNHI	GCTAGC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	5 cut(s)	37, 40, 43, 46, 445
BccI	CCATC	1 cut(s)	649
BciT130I	CCWGG	2 cut(s)	306, 445
BfaI	CTAG	4 cut(s)	192, 288, 333, 726
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	339
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	5 cut(s)	51, 54, 57, 60, 459
BlsI	GCNGC	5 cut(s)	52, 55, 58, 61, 460
Bme1390I	CCNGG	2 cut(s)	306, 445
BmrFI	CCNGG	2 cut(s)	306, 445
BmsI	GCATC	4 cut(s)	343, 499, 557, 649
BmtI	GCTAGC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	429
Bse1I	ACTGG	1 cut(s)	558
Bse3DI	GCAATG	2 cut(s)	49, 445
BseBI	CCWGG	2 cut(s)	306, 445
BseCI	ATCGAT	1 cut(s)	429
BseGI	GGATG	1 cut(s)	664
BseMI	GCAATG	2 cut(s)	49, 445
BseMII	CTCAG	3 cut(s)	154, 330, 587
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	37, 40, 43, 46, 445
BshFI	GGCC	2 cut(s)	203, 405
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	203, 405
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	210, 279
BspACI	CCGC	2 cut(s)	356, 719
BspANI	GGCC	2 cut(s)	203, 405
BspCNI	CTCAG	3 cut(s)	153, 331, 586
BspDI	ATCGAT	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	49, 445
BsrI	ACTGG	1 cut(s)	558
BssMI	GATC	2 cut(s)	210, 279
Bst2UI	CCWGG	2 cut(s)	306, 445
Bst4CI	ACNGT	2 cut(s)	316, 370
Bst6I	CTCTTC	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	261, 334, 463
BstDEI	CTNAG	3 cut(s)	140, 339, 573
BstF5I	GGATG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	338, 474
BstKTI	GATC	2 cut(s)	213, 282
BstMBI	GATC	2 cut(s)	210, 279
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 59, 260, 471
BstNI	CCWGG	2 cut(s)	306, 445
BstNSI	RCATGY	2 cut(s)	221, 263
BstSCI	CCNGG	2 cut(s)	304, 443
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	5 cut(s)	37, 40, 43, 46, 445
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	203, 405
BsuTUI	ATCGAT	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	481, 551
Cac8I	GCNNGC	3 cut(s)	261, 334, 463
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	2 cut(s)	338, 474
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	4 cut(s)	218, 260, 350, 381
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	140, 339, 573
DpnI	GATC	2 cut(s)	212, 281
DpnII	GATC	2 cut(s)	210, 279
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco47III	AGCGCT	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	304, 443
FaeI	CATG	4 cut(s)	221, 263, 353, 384
FatI	CATG	4 cut(s)	217, 259, 349, 380
FauI	CCCGC	1 cut(s)	349
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	5 cut(s)	51, 54, 57, 60, 459
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	5 cut(s)	51, 54, 57, 60, 459
FspBI	CTAG	4 cut(s)	192, 288, 333, 726
FspI	TGCGCA	1 cut(s)	473
GlaI	GCGC	2 cut(s)	337, 473
GluI	GCNGC	5 cut(s)	51, 54, 57, 60, 459
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	203, 405
HhaI	GCGC	2 cut(s)	338, 474
Hin1II	CATG	4 cut(s)	221, 263, 353, 384
Hin6I	GCGC	2 cut(s)	336, 472
HinP1I	GCGC	2 cut(s)	336, 472
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	2 cut(s)	25, 731
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	3 cut(s)	239, 345, 750
Hpy188I	TCNGA	2 cut(s)	210, 279
Hpy188III	TCNNGA	4 cut(s)	350, 559, 646, 735
Hpy8I	GTNNAC	3 cut(s)	239, 345, 750
HpyCH4III	ACNGT	2 cut(s)	316, 370
HpyCH4V	TGCA	6 cut(s)	239, 412, 461, 506, 512, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 59, 260, 471
HpyF3I	CTNAG	3 cut(s)	140, 339, 573
Hsp92II	CATG	4 cut(s)	221, 263, 353, 384
HspAI	GCGC	2 cut(s)	336, 472
Kzo9I	GATC	2 cut(s)	210, 279
LmnI	GCTCC	2 cut(s)	94, 291
Lsp1109I	GCAGC	5 cut(s)	37, 40, 43, 46, 445
LweI	GCATC	4 cut(s)	343, 499, 557, 649
MaeI	CTAG	4 cut(s)	192, 288, 333, 726
MaeIII	GTNAC	4 cut(s)	383, 491, 541, 710
MalI	GATC	2 cut(s)	212, 281
MboI	GATC	2 cut(s)	210, 279
MboII	GAAGA	4 cut(s)	266, 276, 372, 515
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	3 cut(s)	115, 562, 640
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	3 cut(s)	324, 390, 449
Msp20I	TGGCCA	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	306, 445
MvaI	CCWGG	2 cut(s)	306, 445
MwoI	GCNNNNNNNGC	4 cut(s)	56, 59, 260, 471
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	2 cut(s)	210, 279
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	4 cut(s)	221, 263, 353, 384
NmuCI	GTSAC	3 cut(s)	383, 541, 710
NsbI	TGCGCA	1 cut(s)	473
NspI	RCATGY	2 cut(s)	221, 263
NspV	TTCGAA	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	263
PagI	TCATGA	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	1 cut(s)	731
PkrI	GCNGC	5 cut(s)	52, 55, 58, 61, 460
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	304, 443
PspGI	CCWGG	2 cut(s)	304, 443
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	324, 390, 449
SatI	GCNGC	5 cut(s)	51, 54, 57, 60, 459
Sau3AI	GATC	2 cut(s)	210, 279
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	306, 445
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	4 cut(s)	343, 499, 557, 649
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	3 cut(s)	115, 562, 640
SsiI	CCGC	2 cut(s)	356, 719
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	4 cut(s)	192, 288, 333, 726
StyD4I	CCNGG	2 cut(s)	304, 443
TaaI	ACNGT	2 cut(s)	316, 370
TaqI	TCGA	3 cut(s)	111, 429, 635
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	3 cut(s)	115, 562, 640
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	3 cut(s)	324, 390, 449
Tru9I	TTAA	3 cut(s)	324, 390, 449
TscAI	CASTG	2 cut(s)	481, 558
TseFI	GTSAC	3 cut(s)	383, 541, 710
TseI	GCWGC	5 cut(s)	50, 53, 56, 59, 458
Tsp45I	GTSAC	3 cut(s)	383, 541, 710
TspDTI	ATGAA	4 cut(s)	17, 447, 579, 599
TspRI	CASTG	2 cut(s)	481, 558
VneI	GTGCAC	1 cut(s)	237
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	2 cut(s)	221, 263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	4 cut(s)	192, 288, 333, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.