Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

63400442 .. 63410090

Gene Structure 9649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAGATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAGAAGCTTCGCCAAGATAGATCGAAAGATTGCTTATCAGCTTTGCCTACAAGAGAGCTTCTGCAAGAGCAAATGAAGATCACAACCAAAGCCCTTACCCTTAAGACAAAAAGTCCTTTTCGAAACGCAAGAAAAGAACCCCGTGACAAGGTTCAGCTTGACCATCCGCGTGTAAGCGGATATTGCAAAGAAGATATTTATCTAGGATTCATTAAGATTTCTCGGAGAAGGTTCACATGGTACTCAAGATTTCTAGGAAATAAATCTGCAAACTTTTTGATCCTAGAGCTTTTATATGAAACAAGTAAAATGGAGTATCACACAATGGAGCTCATGGTATTCGAAATCCCCAGTGCTACCAAAACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

162

Amino Acids

18.91

Weight (kDa)

8.94

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	286
AciI	CCGC	2 cut(s)	284, 294
AclWI	GGATC	1 cut(s)	391
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	218
AhdI	GACNNNNNGTC	1 cut(s)	228
AluBI	AGCT	8 cut(s)	26, 124, 158, 175, 274, 406, 448, 485
AluI	AGCT	8 cut(s)	26, 124, 158, 175, 274, 406, 448, 485
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	391
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	26
AsuII	TTCGAA	2 cut(s)	238, 459
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	288
BfaI	CTAG	3 cut(s)	320, 371, 401
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	462
Bpu14I	TTCGAA	2 cut(s)	238, 459
BpuEI	CTTGAG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	315
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	265
Bsp119I	TTCGAA	2 cut(s)	238, 459
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	137, 195, 396
BspACI	CCGC	2 cut(s)	284, 294
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	391
BspT104I	TTCGAA	2 cut(s)	238, 459
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	137, 195, 396
BstAFI	CTTAAG	1 cut(s)	218
BstBI	TTCGAA	2 cut(s)	238, 459
BstDEI	CTNAG	2 cut(s)	101, 486
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	140, 198, 399
BstMBI	GATC	3 cut(s)	137, 195, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	58
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	55, 354, 451
CviJI	RGCY	9 cut(s)	26, 124, 158, 175, 209, 274, 406, 448, 485
CviKI_1	RGCY	9 cut(s)	26, 124, 158, 175, 209, 274, 406, 448, 485
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	101, 486
DpnI	GATC	3 cut(s)	139, 197, 398
DpnII	GATC	3 cut(s)	137, 195, 396
DriI	GACNNNNNGTC	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	3 cut(s)	58, 357, 454
FaiI	YATR	6 cut(s)	56, 68, 355, 412, 414, 452
FatI	CATG	3 cut(s)	54, 353, 450
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	3 cut(s)	320, 371, 401
GluI	GCNGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	58, 357, 454
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	2 cut(s)	43, 339
HpyCH4V	TGCA	6 cut(s)	4, 29, 40, 181, 303, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	2 cut(s)	101, 486
Hsp92II	CATG	3 cut(s)	58, 357, 454
Kzo9I	GATC	3 cut(s)	137, 195, 396
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	2 cut(s)	33, 481
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	3 cut(s)	320, 371, 401
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	139, 197, 398
MboI	GATC	3 cut(s)	137, 195, 396
MboII	GAAGA	2 cut(s)	205, 320
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	1 cut(s)	60
MseI	TTAA	2 cut(s)	219, 330
MslI	CAYNNNNRTG	1 cut(s)	285
MspCI	CTTAAG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	300
NdeII	GATC	3 cut(s)	137, 195, 396
NlaIII	CATG	3 cut(s)	58, 357, 454
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	2 cut(s)	238, 459
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	219, 330
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	137, 195, 396
SduI	GDGCHC	1 cut(s)	450
SfuI	TTCGAA	2 cut(s)	238, 459
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	218, 361
SmoI	CTYRAG	2 cut(s)	218, 361
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	284, 294
SspMI	CTAG	3 cut(s)	320, 371, 401
SstI	GAGCTC	1 cut(s)	450
TaqI	TCGA	3 cut(s)	140, 238, 459
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	219, 330
Tru9I	TTAA	2 cut(s)	219, 330
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	6 cut(s)	62, 90, 111, 206, 316, 429
TspRI	CASTG	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	3 cut(s)	320, 371, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.