Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

21189962 .. 21191996

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG101400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTGGATGTGGATCCTAATGAGTCAATATATCTAGTCGGAATGATGGTGAATTATCATGAATACAGTGTCCTAAGGGTGGTGTTGATGTCTGCAACTGCTGATATTGGAAGGTACAGGGATTACTTTAAAGATTATGGCGGGGATGAATGGGTGGAAGTGCTTGCAATCCCTAACTCTGGCCAGAAAATCGTTTTTCAGAAAAGGGTTTCTTATCTTGAAGAGATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAGAAGCTTCGCCAAGATAGGTTGCAGCTCAATAAGCAGATTCAGCCACTTGAGAGTTATCTCTGTTCCAACTCATTGGATGAGGAAAGACGGAAGTCAAATTTTTCTGCATCCACAACAACTCCCAGGCATTTCCAACATGAAACACCTCAAGCAGCTGCAATCAGTTGTGAGCCAAACGTGAAAGTGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

177

Amino Acids

20.3

Weight (kDa)

5.03

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	8, 21
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	436
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	79, 179
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	4 cut(s)	245, 343, 364, 494
AluI	AGCT	4 cut(s)	245, 343, 364, 494
AlwI	GGATC	2 cut(s)	8, 21
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	4 cut(s)	245, 361, 491, 494
ApoI	RAATTY	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	232, 373, 481, 503
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	463
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	4 cut(s)	246, 362, 492, 495
BlsI	GCNGC	4 cut(s)	247, 363, 493, 496
Bme1390I	CCNGG	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	455
BoxI	GACNNNNGTC	1 cut(s)	430
BpuEI	CTTGAG	2 cut(s)	407, 471
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 179
Bse21I	CCTNAGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	4 cut(s)	13, 151, 421, 446
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	79, 179
BseMII	CTCAG	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	232, 373, 481, 503
BshFI	GGCC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	79, 179
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	8, 21
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	74, 320
BstF5I	GGATG	4 cut(s)	13, 151, 421, 446
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 379
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	232, 373, 481, 503
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	13, 151, 421, 446
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	4 cut(s)	59, 274, 476, 531
CviJI	RGCY	7 cut(s)	183, 245, 343, 364, 382, 494, 511
CviKI_1	RGCY	7 cut(s)	183, 245, 343, 364, 382, 494, 511
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	74, 320
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraI	TTTAAA	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	4 cut(s)	62, 277, 479, 534
FaiI	YATR	7 cut(s)	31, 60, 138, 275, 287, 477, 532
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FatI	CATG	4 cut(s)	58, 273, 475, 530
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	246, 362, 492, 495
FokI	GGATG	4 cut(s)	20, 158, 428, 433
Fsp4HI	GCNGC	4 cut(s)	246, 362, 492, 495
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	4 cut(s)	246, 362, 492, 495
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	62, 277, 479, 534
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	23, 376
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	41, 201
Hpy188III	TCNNGA	2 cut(s)	59, 218
HpyAV	CCTTC	2 cut(s)	105, 262
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	7 cut(s)	95, 167, 248, 259, 361, 446, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 379
HpyF3I	CTNAG	2 cut(s)	74, 320
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	4 cut(s)	62, 277, 479, 534
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	103, 165, 197, 252, 448, 475
Lsp1109I	GCAGC	4 cut(s)	232, 373, 481, 503
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	516
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	3 cut(s)	52, 279, 436
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	19, 429, 496
MnlI	CCTC	2 cut(s)	412, 495
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	370, 379
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	62, 277, 479, 534
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	247, 363, 493, 496
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PshAI	GACNNNNGTC	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	246, 362, 492, 495
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	463
SetI	ASST	8 cut(s)	116, 247, 345, 359, 366, 487, 496, 519
SfaNI	GCATC	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	386, 486
SmoI	CTYRAG	2 cut(s)	386, 486
Sse9I	AATT	3 cut(s)	52, 279, 436
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	461
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	519
TasI	AATT	3 cut(s)	52, 279, 436
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	4 cut(s)	245, 361, 491, 494
TspDTI	ATGAA	6 cut(s)	75, 162, 281, 309, 330, 492
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.