Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

33125987 .. 33126438

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGCAGATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAGAAGCTTCGCCAAGATAGGTTCTCTAGCAATAACAGTGGCAACTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

56

Amino Acids

6.3

Weight (kDa)

4.6

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	26, 124
AluI	AGCT	2 cut(s)	26, 124
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	2 cut(s)	26, 124
CviKI_1	RGCY	2 cut(s)	26, 124
DdeI	CTNAG	1 cut(s)	101
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 68
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	144
FspEI	CC	8 cut(s)	32, 33, 35, 79, 120, 121, 141, 143
GluI	GCNGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	4, 29, 40
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	58
LpnPI	CCDG	1 cut(s)	33
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	144
MluCI	AATT	1 cut(s)	60
NlaIII	CATG	1 cut(s)	58
NspI	RCATGY	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	26
SatI	GCNGC	1 cut(s)	27
SetI	ASST	3 cut(s)	28, 126, 140
SgeI	CNNG	7 cut(s)	32, 49, 53, 67, 95, 143, 156
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	1 cut(s)	60
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	62, 90, 111
TspRI	CASTG	1 cut(s)	160
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.