Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

36890562 .. 36892154

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG275200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAGATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTACTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAGAAGCTTCGCCAAGATAGGTTGCAGCTCAATAAGCAGATTCAGCCACTTGAGAGTTATCTCTGTTCCAACTCATTGGATGAGGAAAGACGGAAGTCAAATTTTTCTGCATCCACAACAACTCCCAGGCATTTCCAACATGAAACACCTCAAGCAGCTGCAATCAGTTGTGAGCCAAACTGTGCAATATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTGGGTTCTATTGAGCGTTCTCTAGCAATAACAGTGGCAAATCCAACTGATCTTGCAAAAGTTAGACTTCGAGCTGAGAGAAAATTACCACCAGGCGCACCAAGGCGCTATTCTGGCACATTGAATGCGTCTTCCACCATCTTGAGACAAGTTGTGATTGATGGCTTAAGAGATCGAAAGATTGCTTATCATCTTTGCCTACAAGAGAGCTTCTGCAAGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

6.96

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	242, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	9 cut(s)	26, 124, 145, 275, 313, 325, 343, 482, 618
AluI	AGCT	9 cut(s)	26, 124, 145, 275, 313, 325, 343, 482, 618
Alw26I	GTCTC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	4 cut(s)	26, 142, 272, 275
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	506, 516
AsuHPI	GGTGA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	13, 154, 262, 284
BccI	CCATC	2 cut(s)	554, 563
BciT130I	CCWGG	2 cut(s)	244, 501
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	517
BfrI	CTTAAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	4 cut(s)	27, 143, 273, 276
BlsI	GCNGC	4 cut(s)	28, 144, 274, 277
Bme1390I	CCNGG	2 cut(s)	244, 501
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	244, 501
BmsI	GCATC	1 cut(s)	236
BoxI	GACNNNNGTC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	3 cut(s)	188, 252, 571
BsaJI	CCNNGG	2 cut(s)	242, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
BseBI	CCWGG	2 cut(s)	244, 501
BseDI	CCNNGG	2 cut(s)	242, 509
BseGI	GGATG	2 cut(s)	202, 227
BseMII	CTCAG	3 cut(s)	115, 366, 474
BseXI	GCAGC	4 cut(s)	13, 154, 262, 284
BshNI	GGYRCC	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	457, 580
BspCNI	CTCAG	3 cut(s)	114, 365, 475
BspLI	GGNNCC	1 cut(s)	384
BspMI	ACCTGC	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	382
BspTI	CTTAAG	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	242, 509
BssMI	GATC	2 cut(s)	457, 580
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	244, 501
Bst4CI	ACNGT	2 cut(s)	299, 442
BstAFI	CTTAAG	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	3 cut(s)	101, 352, 483
BstF5I	GGATG	2 cut(s)	202, 227
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	2 cut(s)	506, 516
BstKTI	GATC	2 cut(s)	460, 583
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	2 cut(s)	457, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 160, 522
BstNI	CCWGG	2 cut(s)	244, 501
BstNSI	RCATGY	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	242, 499
BstV1I	GCAGC	4 cut(s)	13, 154, 262, 284
BstV2I	GAAGAC	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	202, 227
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	334
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	2 cut(s)	506, 516
CseI	GACGC	1 cut(s)	525
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	2 cut(s)	55, 257
DdeI	CTNAG	3 cut(s)	101, 352, 483
DpnI	GATC	2 cut(s)	459, 582
DpnII	GATC	2 cut(s)	457, 580
Eco130I	CCWWGG	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	242, 499
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	2 cut(s)	58, 260
FaiI	YATR	5 cut(s)	56, 68, 258, 392, 401
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FatI	CATG	2 cut(s)	54, 256
Fnu4HI	GCNGC	4 cut(s)	27, 143, 273, 276
FokI	GGATG	2 cut(s)	209, 214
Fsp4HI	GCNGC	4 cut(s)	27, 143, 273, 276
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	2 cut(s)	505, 515
GluI	GCNGC	4 cut(s)	27, 143, 273, 276
HaeII	RGCGCY	1 cut(s)	517
HgaI	GACGC	1 cut(s)	525
HhaI	GCGC	2 cut(s)	506, 516
Hin1II	CATG	2 cut(s)	58, 260
Hin6I	GCGC	2 cut(s)	504, 514
HinP1I	GCGC	2 cut(s)	504, 514
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	374
Hpy188III	TCNNGA	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	43, 362, 370
HpyCH4III	ACNGT	2 cut(s)	299, 442
HpyCH4V	TGCA	9 cut(s)	4, 29, 40, 142, 227, 278, 302, 464, 624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 160, 522
HpyF3I	CTNAG	3 cut(s)	101, 352, 483
Hsp92II	CATG	2 cut(s)	58, 260
HspAI	GCGC	2 cut(s)	504, 514
Kzo9I	GATC	2 cut(s)	457, 580
LpnPI	CCDG	8 cut(s)	33, 229, 256, 342, 399, 486, 507, 513
Lsp1109I	GCAGC	4 cut(s)	13, 154, 262, 284
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	431
MalI	GATC	2 cut(s)	459, 582
MboI	GATC	2 cut(s)	457, 580
MboII	GAAGA	2 cut(s)	377, 531
MluCI	AATT	3 cut(s)	60, 217, 491
MmeI	TCCRAC	3 cut(s)	210, 277, 476
MnlI	CCTC	4 cut(s)	193, 276, 352, 373
MseI	TTAA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	574
MspR9I	CCNGG	2 cut(s)	244, 501
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	244, 501
MwoI	GCNNNNNNNGC	3 cut(s)	151, 160, 522
NdeII	GATC	2 cut(s)	457, 580
NlaIII	CATG	2 cut(s)	58, 260
NlaIV	GGNNCC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	58
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	28, 144, 274, 277
PshAI	GACNNNNGTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	242, 499
PspGI	CCWGG	2 cut(s)	242, 499
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	4 cut(s)	27, 143, 273, 276
Sau3AI	GATC	2 cut(s)	457, 580
ScrFI	CCNGG	2 cut(s)	244, 501
SfaNI	GCATC	1 cut(s)	236
SmlI	CTYRAG	4 cut(s)	167, 267, 550, 574
SmoI	CTYRAG	4 cut(s)	167, 267, 550, 574
Sse9I	AATT	3 cut(s)	60, 217, 491
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	242, 499
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	299, 442
TaqI	TCGA	2 cut(s)	478, 583
TasI	AATT	3 cut(s)	60, 217, 491
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	4 cut(s)	26, 142, 272, 275
TspDTI	ATGAA	4 cut(s)	62, 90, 111, 273
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	447
Vha464I	CTTAAG	1 cut(s)	574
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.