Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Reverse (-)

20633561 .. 20634068

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCTAGAACGAAGGATGAACTCCTCGAGATAAATGGCATTACCCAAATTAAGGTGGCCAGGTACGGAGATCGAATACTTGAAACAATTGAAGCTGCCATAAAGGAATACTTCAAAACAGATAAAAACAGCAGCGGTAGCAATGACAACAACGATATAAAGAGGAAAAGAGATGGTAACAAGGATCGGAAGGAAATTTTTGAAGATGACGACTTCAGAAGCACAGATAGATCGAAGAAGAGGGCTCTAAAGACGCAGAGCAATACTATTGAGACCTTCCGTTATGTGGAGCCAGATTACAGTGAATTCATAGATGATGAATTAGACTTATCTGGTTATGACTTTGAAGCTAATGTTCCGGATATGAAAACCAATCAGAACGGTGGCGGAAGAGTGCTGCCACAGTGGTCAACTCCTGGAAATGGGCGACATCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

146

Amino Acids

16.8

Weight (kDa)

5.34

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	2 cut(s)	135, 387
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	195, 305
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	52, 286, 422
AgsI	TTSAA	5 cut(s)	83, 92, 115, 203, 347
AjnI	CCWGG	2 cut(s)	59, 415
AluBI	AGCT	2 cut(s)	95, 350
AluI	AGCT	2 cut(s)	95, 350
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	3 cut(s)	95, 132, 397
ApoI	RAATTY	2 cut(s)	195, 305
AvaI	CYCGRG	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	82, 144, 384
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	61, 417
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	96, 133, 398
BlsI	GCNGC	3 cut(s)	97, 134, 399
Bme1390I	CCNGG	2 cut(s)	61, 417
BmeT110I	CYCGRG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	61, 417
BsaI	GGTCTC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 286, 422
Bse3DI	GCAATG	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	61, 417
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	52, 286, 422
BseMI	GCAATG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	82, 144, 384
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	3 cut(s)	52, 286, 422
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	70, 184, 230
BspACI	CCGC	2 cut(s)	135, 387
BspANI	GGCC	1 cut(s)	59
BspEI	TCCGGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	148
BssMI	GATC	3 cut(s)	70, 184, 230
Bst2UI	CCWGG	2 cut(s)	61, 417
Bst4CI	ACNGT	3 cut(s)	302, 383, 405
Bst6I	CTCTTC	2 cut(s)	233, 385
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	3 cut(s)	73, 187, 233
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	70, 184, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	61, 417
BstSCI	CCNGG	2 cut(s)	59, 415
BstV1I	GCAGC	3 cut(s)	82, 144, 384
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	307, 410
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	5 cut(s)	59, 95, 245, 292, 350
CviKI_1	RGCY	5 cut(s)	59, 95, 245, 292, 350
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	3 cut(s)	72, 186, 232
DpnII	GATC	3 cut(s)	70, 184, 230
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	233, 385
EarI	CTCTTC	2 cut(s)	233, 385
EciI	GGCGGA	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	59, 415
EcoT38I	GRGCYC	1 cut(s)	247
FaiI	YATR	6 cut(s)	101, 158, 285, 311, 339, 365
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
Fnu4HI	GCNGC	3 cut(s)	96, 133, 398
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	3 cut(s)	96, 133, 398
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	3 cut(s)	96, 133, 398
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	189, 218, 378
Hpy188III	TCNNGA	2 cut(s)	28, 359
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	3 cut(s)	7, 184, 286
HpyCH4III	ACNGT	3 cut(s)	302, 383, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	70, 184, 230
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	46, 73, 306, 318, 372, 402, 429
Lsp1109I	GCAGC	3 cut(s)	82, 144, 384
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	72, 186, 232
MboI	GATC	3 cut(s)	70, 184, 230
MboII	GAAGA	4 cut(s)	215, 247, 250, 402
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	5 cut(s)	48, 87, 195, 305, 320
MluNI	TGGCCA	1 cut(s)	59
MnlI	CCTC	3 cut(s)	35, 156, 234
Mox20I	TGGCCA	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	61, 417
MunI	CAATTG	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	61, 417
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	3 cut(s)	70, 184, 230
NlaIV	GGNNCC	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	97, 134, 399
Psp6I	CCWGG	2 cut(s)	59, 415
PspGI	CCWGG	2 cut(s)	59, 415
PspN4I	GGNNCC	1 cut(s)	291
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	96, 133, 398
Sau3AI	GATC	3 cut(s)	70, 184, 230
ScrFI	CCNGG	2 cut(s)	61, 417
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	5 cut(s)	57, 65, 97, 278, 352
Sfr274I	CTCGAG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	5 cut(s)	48, 87, 195, 305, 320
SsiI	CCGC	2 cut(s)	135, 387
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	59, 415
TaaI	ACNGT	3 cut(s)	302, 383, 405
TaqI	TCGA	3 cut(s)	27, 73, 233
TasI	AATT	5 cut(s)	48, 87, 195, 305, 320
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	2 cut(s)	307, 410
TseI	GCWGC	3 cut(s)	95, 132, 397
TspDTI	ATGAA	4 cut(s)	33, 298, 333, 380
TspGWI	ACGGA	2 cut(s)	81, 269
TspRI	CASTG	2 cut(s)	307, 410
XapI	RAATTY	2 cut(s)	195, 305
XhoI	CTCGAG	1 cut(s)	26
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.