Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000962

Physical Location & Seq

Genomic Coordinates Forward (+)

21994074 .. 22005279

Gene Structure 11206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG131100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGGAAGGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCAGCTGGAAGACAATCATATTAAGATTCCCTTCCTCTATAAAAGCTTCTAAGCAGTGGAACTCTGAAGTGATTTCAACTAAAGGTTCACCGACATCTAAGAAGCTGAGTCCTCCACAAATTGGCACCAGACAACCTCAGTCCAATGGAGATGTGGATCTCTCTGCCGCATTATTTGTTTCTTTGAAAATGCTTCGAACTACTCTCGTAAGGGAAGCTGAGGATGGGTTCATGGCATACCACGTATTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009409 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032392 GO:0032508 GO:0032870 GO:0033554 GO:0033993 GO:0034641 GO:0042221 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0055044 GO:0070035 GO:0070417 GO:0070887 GO:0071103 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0097306 GO:0140097 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03018 ko03440 ko03460 map03018 map03440 map03460

Pfam Domains

Protein Families

DEAD HRDC Helicase_C RQC RecQ_Zn_bind

Protein Analysis

98

Amino Acids

10.85

Weight (kDa)

9.66

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10930
fragaria_vesca	FvH4_5g28920 FvH4_5g28920
malus_domestica	MD02G1262900.v1.1 MD07G1056800.v1.1 MD07G1057400.v1.1
prunus_persica	Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1 Prupe.4G271400_v2.0.a1
pyrus_communis	pycom02g22480 pycom02g22490 pycom02g22530 pycom07g04380
rosa_chinensis	RchiOBHm_Chr2g0101731 RchiOBHm_Chr2g0146651 RchiOBHm_Chr3g0471841 RchiOBHm_Chr4g0402091 RchiOBHm_Chr5g0019321 RchiOBHm_Chr7g0221231
rosa_laevigata	RLG00000002168 RLG00000008436
rosa_multiflora	Rmu_co8338979.1_g000001 Rmu_co8389917.1_g000001 Rmu_sc0000212.1_g000013 Rmu_sc0000324.1_g000016 Rmu_sc0000518.1_g000001 Rmu_sc0000808.1_g000043 Rmu_sc0002206.1_g000018 Rmu_sc0002551.1_g000024 Rmu_sc0004296.1_g000023 Rmu_sc0009806.1_g000017 Rmu_sc0032411.1_g000001 Rmu_ssc0000291.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431210 Rroxscaffold_1G00026280 Rroxscaffold_3G00238540 Rroxscaffold_4G00313160 Rroxscaffold_4G00330040 Rroxscaffold_5G00342230 Rroxscaffold_5G00352050
rosa_rugosa	Rorug07G0201600 Rorug07G0253300
rosa_samantha	Rh1BG131100 Rh1CG101400 Rh2BG215600 Rh2CG271000 Rh4DG065200 Rh4DG134600 Rh5AG275200 Rh5AG434000 Rh7AG340500 Rh7BG172400 Rh7BG331600 Rh7BG331700 Rh7CG358400 Rh7DG335700 Rh7DG335800 Rh7DG339200 Rh7DG339300
rosa_wichuraiana	Rw6G023870 Rw7G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	22, 120, 229
AluBI	AGCT	4 cut(s)	48, 89, 148, 260
AluI	AGCT	4 cut(s)	48, 89, 148, 260
AlwI	GGATC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	123
AsuII	TTCGAA	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	46, 210
BlsI	GCNGC	2 cut(s)	47, 211
BmiI	GGNNCC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	140, 194, 252
BseXI	GCAGC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	210
BspCNI	CTCAG	3 cut(s)	141, 193, 253
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	167
BssMI	GATC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	5 cut(s)	93, 141, 149, 180, 261
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	27, 274
CviJI	RGCY	4 cut(s)	48, 89, 148, 260
CviKI_1	RGCY	4 cut(s)	48, 89, 148, 260
DdeI	CTNAG	5 cut(s)	93, 141, 149, 180, 261
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	129
FaeI	CATG	2 cut(s)	30, 277
FaiI	YATR	5 cut(s)	28, 62, 83, 275, 280
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FatI	CATG	2 cut(s)	26, 273
Fnu4HI	GCNGC	2 cut(s)	46, 210
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	2 cut(s)	46, 210
GluI	GCNGC	2 cut(s)	46, 210
Hin1II	CATG	2 cut(s)	30, 277
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	2 cut(s)	69, 151
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	285
HpyF3I	CTNAG	5 cut(s)	93, 141, 149, 180, 261
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	30, 277
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	27, 34, 184
Lsp1109I	GCAGC	1 cut(s)	57
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	88, 165, 189, 256
MseI	TTAA	2 cut(s)	12, 65
MspA1I	CMGCKG	1 cut(s)	48
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	30, 277
NlaIV	GGNNCC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	47, 211
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	12, 65
SatI	GCNGC	2 cut(s)	46, 210
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	160
SetI	ASST	8 cut(s)	12, 50, 91, 130, 150, 181, 262, 288
SfuI	TTCGAA	1 cut(s)	238
SgeI	CNNG	6 cut(s)	39, 54, 61, 183, 260, 286
SphI	GCATGC	1 cut(s)	30
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	210
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	238
TasI	AATT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	12, 65
Tru9I	TTAA	2 cut(s)	12, 65
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	164
XceI	RCATGY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.